Acinetobacter piscicola: ACDW34_03600
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Entry
ACDW34_03600 CDS
T11504
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
apis Acinetobacter piscicola
Brite
KEGG Orthology (KO) [BR:
apis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
apis03016
]
ACDW34_03600
Enzymes [BR:
apis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ACDW34_03600
Transfer RNA biogenesis [BR:
apis03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ACDW34_03600
Prokaryotic type
tRNA splicing ligases
ACDW34_03600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
XEZ56009
LinkDB
All DBs
Position
complement(747308..748513)
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AA seq
401 aa
AA seq
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MGIKKILNAKADYGVPVKIYTNDIDEESMTQLRKMAQLQFIHSHIAVMPDVHVGKGATVG
SVIPTQNAIIPAAVGVDIGCGMNAMRLSLKADQLPDNLSTLRNAIERKVPVGFEMHKQIK
AKASTLTPLDKRLKLITDKHPALKRMLRHFDSTWQKQIGTLGGGNHFIELCLDENHDVWI
MLHSGSRGLGNVIGTYFIERAKKEAQSRFGHVPDKDLSYFAEGSNSFDDYFEAVEWAQEY
AYENRREMMRLILEAIRPLLPSFQMTKEAINCHHNYVQKELHFGEEVFVTRKGAIRAGAD
EYGIIPGSMGAKSFIVKGKGNPDSFCSCSHGAGRKMSRSKAKNLFNQQDLIAQTEGIECR
KDKGVVDEIPSAYKDIDEVMANQTDLIEVVHTLKQVMCIKG
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgggcataaaaaaaattctgaacgccaaagcagattatggtgttcccgtaaaaatttat
accaacgacattgacgaagaaagcatgacccaattgcgtaaaatggcacaattacagttt
attcattcccatattgcggtcatgcctgatgtacatgtcggcaaaggcgcaaccgtaggt
agtgtcattccgacccaaaatgccattattcctgccgcggtgggcgtagacattggctgt
ggcatgaatgcgatgcgtttgagtttaaaagcagatcaactgcctgataatttaagtaca
ttgcgtaatgcaattgagcgtaaagtacctgttgggtttgaaatgcataagcaaattaaa
gccaaagcttcaacgctgacaccactcgataaacgtttaaaattgattaccgataaacac
cctgcgctaaaacgtatgttgcgccatttcgactcgacatggcaaaagcaaatcggcaca
ctcggtggtggtaaccattttatcgagttgtgtttagatgaaaatcatgatgtttggatc
atgttgcattcaggcagtcgaggtcttggtaatgtaattggcacctattttattgaacgt
gccaagaaagaagcccaaagccgttttggtcatgtacctgacaaagatttatcttacttt
gccgaaggttcaaacagttttgatgattattttgaagccgtagagtgggcacaagaatat
gcttatgaaaaccgacgtgaaatgatgcgtttgattttagaagccattcgtccactactc
cctagctttcaaatgaccaaagaagcgattaattgtcaccataattatgtacaaaaagaa
ctgcattttggcgaagaggtttttgtgacgcgcaaaggtgcaattcgtgcaggtgcagat
gagtacggcattatccccggttcaatgggagcaaaatcttttattgttaaagggaaaggt
aatcccgattcattctgctcatgctcgcatggtgcaggtcgaaaaatgagccgtagtaaa
gccaaaaatctgtttaatcagcaagatttaattgcccaaactgaaggaatcgaatgtcgt
aaagacaaaggcgtggtggatgaaattccaagtgcctacaaagatattgatgaagtgatg
gcaaaccaaaccgacttaattgaagtggtgcatactctcaaacaagtcatgtgtattaaa
ggctaa
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