Actinobacillus pleuropneumoniae L20 (serotype 5b): APL_0575
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Entry
APL_0575 CDS
T00476
Symbol
deaD
Name
(GenBank) cold-shock DEAD box protein A-like protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
apl
Actinobacillus pleuropneumoniae L20 (serotype 5b)
Pathway
apl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APL_0575 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apl03019
]
APL_0575 (deaD)
03009 Ribosome biogenesis [BR:
apl03009
]
APL_0575 (deaD)
Enzymes [BR:
apl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
APL_0575 (deaD)
Messenger RNA biogenesis [BR:
apl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
APL_0575 (deaD)
Ribosome biogenesis [BR:
apl03009
]
Prokaryotic type
rRNA helicases
APL_0575 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DRTGG
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABN73677
UniProt:
A3MZU1
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All DBs
Position
complement(647423..649282)
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AA seq
619 aa
AA seq
DB search
MTTNSLTFADLGLPQSILDAVNDMGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLAQIDPTKRHPQMLVMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLR
ALKQGSQVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPEN
HQTALFSATMPEPIRRITRRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFL
EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILV
ATDVAARGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI
EHLMKKPIDEVAIPNHEILMAKRREKFKARVSKQLEHHDLEKYRELLEDLFTADQDHEEL
AAAMMMMLQEKQKLILPPDPEIRAARGERGRRDRDDRRGGRDERRGGREHRENNGVAMDL
YRIELGREDGVEVRHIVGAIANEGDISSRYIGHIKLHDTYSTIELPQGMPNHIVQHFAQK
ARVLNKQMQMSLLGPAGGVNSQPFEERRGGGRRNDRNDRNDRRSDRGGRSDRREGGFNDR
KKGGFKEKRFNDKGRGRRD
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgacaactaattctttaactttcgcagaccttggtcttcctcaatctattcttgatgct
gtaaacgacatggggtttgtgacgccttctcctattcaacaagaaacgattcctcattta
ttagccggccgtgacgtactcggtatggcacaaaccggtagcggtaaaacggcggcattc
tctttacctttattagcgcaaatcgatccgactaaacgtcatccgcaaatgttggtgatg
gcgccgacccgtgaactcgcgattcaagtcgcggatgcttgcgaacaatttactaaaaat
atgaaaggcgttaatgtggttaccgtttacggcggtcagcgttacgacattcaattacgt
gctttaaaacaaggctcgcaagtggtggtcggtacgccggggcgtattcttgaccatatt
cgtcgcggtacgttagacctctctgcgctacaatccatcgtattggatgaagcggacgaa
atgcttcgtatgggctttattgacgacgttgaaaccgtgatggcggaattaccggaaaat
caccaaacggcgttattctccgcaacgatgccggagccgattcgtcgtattactcgtcgc
tttatgcaagatccgcaagaagtcaaaattcaagcgacgcaacgttccgcaccggatatt
acccaaagttattggttagtaaacggcttccgtaaaaacgatgcgttattgcgtttctta
gaagtcgaagaatttgatgcggcaatcatctttactcgtaccaaaaccggcacgattgat
attaccgaattatgtgagcgtaacggctatcgcacggcggcgttaaacggcgatatgacc
caacaagcgcgtgaacaaacgttagataaattaaaatcgggtcgtttagatattttagtg
gcgaccgacgttgccgctcgcggcatcgatatcgaacgcatcagccttgtagtaaacttt
gatattccgttagatgcggaatcttatgttcaccgtatcggtcgtaccggtcgtgcagga
cgttcggggcgtgccttattattcgtcgaaccgcgtgaacgccgtttactgcgtaacatc
gaacacttaatgaaaaaaccgatcgatgaagtggcgattcctaatcacgaaattctaatg
gcaaaacgtcgcgagaaattcaaagcgcgtgtttctaaacaattagagcatcacgattta
gaaaaataccgcgagttgcttgaagatttattcactgccgaccaagatcacgaagaatta
gcggcggcaatgatgatgatgcttcaagagaaacaaaaactcattcttccgccggatccg
gaaattcgtgcggcacgcggcgaacgcggtcgcagagatcgtgatgatcgtcgcggcgga
cgcgatgaacgccgaggcggccgtgaacaccgtgagaataacggtgtagcaatggattta
tatcgtatcgaattaggccgtgaagacggtgtggaagtgcgtcatatcgttggcgctatc
gctaacgaaggcgatattagcagccgctatatcggtcatatcaaattacacgatacttat
tctacgattgaattaccgcagggtatgccgaatcatatcgtgcaacactttgcacaaaaa
gcgcgcgtactaaacaaacaaatgcaaatgtctttattaggccctgccggtggtgtaaac
agccaaccgtttgaagaacgtcgcggcggcggtcgtcgtaacgatagaaacgaccgcaat
gatcgtcgtagtgatcgcggcggacgttctgaccgtcgtgaaggcggctttaacgaccgt
aaaaaaggcggttttaaagaaaaacgttttaatgacaaaggtcgtggtcgtcgcgactaa
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