Actinobacillus pleuropneumoniae L20 (serotype 5b): APL_1475
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Entry
APL_1475 CDS
T00476
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor 70
KO
K03086
RNA polymerase primary sigma factor
Organism
apl
Actinobacillus pleuropneumoniae L20 (serotype 5b)
Pathway
apl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
apl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
APL_1475 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apl03021
]
APL_1475 (rpoD)
Transcription machinery [BR:
apl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
APL_1475 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SQS_PSY
WHD_Rok
CDC45
Motif
Other DBs
NCBI-ProteinID:
ABN74559
UniProt:
A3N2C3
LinkDB
All DBs
Position
1688201..1690060
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AA seq
619 aa
AA seq
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MEQQLEQQSQLELLIAQGREQGYLTISEVHDHLPEELVDAEQIEDIIQMINDMGIKVLET
APDTDELMLAENIADEDVVEEATKVLSTVESELGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEEGINEVQCAVAEYPEALTELIGFYAQVEEGTMRLSDLVTAFVDPNIQADEALED
LDVDLDDEEEAEDVADVDDESEEEESDGSTDTGDDNSIDPELAREKFYALREQHEKALQA
IQKHGRSHKKSREQIQALSDIFREFRLVPKQFDLLVESMQKMMKQVRSEERQIQRYAVEY
AQMKKADFLKLFQGNETSEEWIEKAINAKKGAAPKLANYIDQIRVNIDNLQRMEQTTGLT
IAQIREIGGRIANGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQCLQEM
GREATPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDS
ATAESLRLATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKA
LRKLRHPSRSETLRSFLDD
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggaacaacaattagaacagcaatctcaattagaacttctgattgcccaagggcgtgaa
caaggttatttaaccatttcggaagtgcacgaccacttaccggaagagttggttgatgcg
gagcagatcgaagatattattcaaatgatcaacgatatggggattaaagttttagaaacc
gccccggataccgacgagttaatgctcgcggaaaatatcgctgatgaagatgtcgtggaa
gaagcgactaaagtgctttcgacggtagaatctgaattaggtagaacgaccgatccggta
cgtatgtatatgcgtgaaatgggtacggtggaattgcttacccgtgaaggcgaaattgat
attgcgaaacgtattgaagaaggtatcaatgaagtgcaatgtgcggttgcagaatatccg
gaagccttaaccgaattaatcggtttctatgcgcaagttgaagaaggtacgatgcgttta
tcggatcttgttaccgctttcgttgatccgaatatccaagcggacgaagcgttggaagat
ttagacgtagatcttgatgacgaagaagaagcggaagatgttgcggatgtagatgacgag
agcgaagaggaagaaagcgacggcagtacggataccggtgatgacaattcaatcgatcct
gaacttgctcgcgaaaaattctatgcgttacgcgagcaacacgaaaaagccttacaagcg
attcaaaaacatggtcgtagccataaaaaatcaagagagcagatccaagcgctttcggat
attttccgtgagttccgtttagtaccgaaacaatttgatttacttgtcgaatcgatgcaa
aaaatgatgaaacaagtacgttcggaagagcgccaaattcaacgttatgcggttgaatat
gcacaaatgaaaaaggctgacttcttaaaattgttccaaggtaacgaaacgtcggaagaa
tggattgaaaaagcaattaatgcgaaaaaaggcgccgcgcctaaattggcgaactatatc
gaccaaattcgcgtaaatatcgataatttacaacgtatggagcaaacgaccggtctgact
atcgcacaaattcgtgaaatcggcgggcgtatcgcaaacggtgaattaaaagctcgccgt
gcgaaaaaagagatggtggaagcgaacttacgtttagtaatctcgattgcgaaaaaatat
accaaccgcggtttacaattcctagatttaattcaggaaggtaacatcggtttgatgaaa
gcggtcgataaattcgaatatcgtcgcggttataagttctctacttatgcgacttggtgg
attcgtcaggcgattacccgttcaatcgccgaccaagcacgtaccatccgtattccggta
catatgatcgaaaccatcaataaactgaaccgtatttctcgtcaatgtttacaagaaatg
ggacgtgaagcgacgccggaagagttagcggaacgtatgggaatgccggaagataagatt
cgtaaagtattgaagattgccaaagagccgatttcaatggaaacgccgattggcgatgac
gacgattcgcatttaggtgatttcattcaagacgaaagccttgaattaccgttagattcg
gcaactgcggaaagtttacgtttagcaacgaatgaagtattggaaggcttaacgccgcgt
gaagcaaaagtattgcgtatgcgtttcggtattgatatgaacacagaccacacgcttgag
gaagtcggtaagcagtttgacgtaacgcgtgaacgtattcgtcagattgaagcgaaagcg
ttacgcaaacttcgtcacccaagccgttcggaaactttacgtagtttcttagacgactag
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