Actinobacillus pleuropneumoniae L20 (serotype 5b): APL_1478
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Entry
APL_1478 CDS
T00476
Symbol
vacB
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
apl
Actinobacillus pleuropneumoniae L20 (serotype 5b)
Pathway
apl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APL_1478 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apl03019
]
APL_1478 (vacB)
03016 Transfer RNA biogenesis [BR:
apl03016
]
APL_1478 (vacB)
Enzymes [BR:
apl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
APL_1478 (vacB)
Messenger RNA biogenesis [BR:
apl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
APL_1478 (vacB)
Transfer RNA biogenesis [BR:
apl03016
]
Prokaryotic type
tRNA degradation factors
APL_1478 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
ABN74562
UniProt:
A3N2C6
LinkDB
All DBs
Position
complement(1692326..1694683)
Genome browser
AA seq
785 aa
AA seq
DB search
MIIDPNYQQESEKYENPVPSREFILQTIRAFDAPMSREELLEAFHIYDEERIEGVRRRLR
AMENDGQLIFTKGKRYALPEKMDLLKGTVIGHRDGYGFLQVEGGEKSDDWFIPNSQMTRV
MHGDFVLAQPNGTDRRGRREVRIVRVLEARKKQIVGRFFLESGIGFVVPDDSRISQDILI
PDEHRMGARMGQVVVVELQERKAGFTRPVGFITEILGDNLAPGMEIEIALRNHDIPHVWP
EGVEKQIRQFSEEVPEEAKAGRVDLRDLPLITIDGEDARDFDDAVFARKEGDGWRLWVAI
ADVSYYVRPKTALDLEAANRGNSVYFPNRVIPMLPEILSNGLCSLNPQVDRLCLVAEMTV
SKKGELTGYQFYQAVMNSHARLTYTKVWKILEGDEALRERYATLVPHLETLNEMFKVLQN
TRRHRGAIEFETIENQFIFNPQGRIERIEPLIRNDAHKIIEECMILANIAAARLVEKANE
PALFRIHDKPSEEKLTSFKSFIKECGLTWDVGLDPTPKDYAVLLEQLAERPDRELIQTML
LRSLKQAVYSADNVGHFGLALTEYAHFTSPIRRYPDLLLHRAIKYLIEKGKGNTRHYTDC
GGYHYKLDDIDQFGEKCSAAERRADEATREVADWLKCEFMQDHLGEEFEGVISSVTGFGL
FVKINELLIDGLVHISTLDNDYYHYDADRQRLVGGSGVIYRLGDPVKVKVINVNLDDKKI
DFALIDNLRKGIAVGKTAKQKAKKNAGDKPIFKEPKTIKSAKGKSKAKGKATKTAKKSSG
RQRKK
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgataattgatccgaattaccaacaagaaagcgaaaagtacgaaaatcccgtaccgagc
agagaatttattttacaaaccattcgagcattcgatgcgccgatgagtcgtgaagaatta
ctcgaagctttccatatttatgatgaagaacgtatcgaaggcgttcgccgtcgcttacga
gcgatggaaaacgacgggcaattaatttttaccaaaggtaaacgttatgcgttaccggaa
aaaatggatttgctgaaaggtacggttatcggtcatcgtgacggctacggttttctgcaa
gtggaaggcggcgaaaaaagtgacgattggtttattccgaatagccaaatgacacgcgtg
atgcacggtgacttcgtgcttgcccaaccgaacggcaccgatcgccgaggtcgccgtgaa
gtacgaatcgttcgcgtattggaagcacgtaaaaaacaaattgtcggtcgtttcttcctt
gaaagcggtatcggcttcgtagtaccggacgatagccgtatcagccaagatattttaatt
cccgacgaacaccgtatgggtgcaagaatgggacaagtggttgtggtcgaactgcaagaa
cgtaaagccggttttactcgtccggtcggctttattaccgaaatcttaggcgataatctt
gcaccggggatggaaatcgaaatcgctctacgtaaccacgacattccgcacgtttggccg
gaaggcgtagaaaaacaaattcgccaattcagcgaagaagtgccggaagaagcgaaagct
ggccgtgtagatctgcgtgatttaccgttaataacgattgacggggaagacgcacgagat
tttgacgacgccgtctttgccagaaaagaaggcgacggttggcgtttatgggtagcgatt
gccgatgtgagttattacgttcgtccgaaaaccgcactggatttggaagcggcgaatcgc
ggcaattcggtttacttcccgaatcgagtgatcccgatgttaccggaaattctgtcaaac
ggtttatgttcattaaatccgcaagtggacagattatgtttggtggcagaaatgaccgta
tcgaaaaaaggcgaactgaccggctatcaattctatcaagcggtaatgaactcgcacgcc
cgcttaacttatactaaagtttggaaaatattagaaggtgacgaagcgttacgtgagcgt
tatgcaacactggtaccgcatttggaaactttaaatgagatgtttaaagtgttgcaaaac
actcgtcgtcatcgaggtgcgattgaatttgaaacgattgaaaaccaatttattttcaat
ccgcaaggcagaatcgaacgtatcgagccgctaattcgtaacgatgcgcacaaaatcatc
gaagaatgtatgattttagcgaatattgccgccgctcgtcttgtcgaaaaagccaatgaa
ccggcgttattccgtattcacgataaaccgagcgaagaaaagctcactagttttaaatcc
tttatcaaagaatgcggactcacttgggacgtcgggcttgatccgacaccaaaagattat
gccgtattactcgaacaactcgccgaacgtccggatcgcgaattgattcaaactatgtta
ctgcgctcgctcaaacaagcggtctattcagcggataacgtcggacatttcggtttggct
ttaaccgaatacgcccactttacttcacctattcgccgttatccggatttgctgttacac
cgtgcaattaaatacttgattgaaaagggaaaaggcaataccagacattataccgattgc
ggcggttatcactataaattggacgatatcgaccaattcggcgagaaatgttcggcagcc
gaacgtcgggcggacgaagcgacccgtgaagtggcggattggttgaaatgcgaatttatg
caagatcatctcggcgaagagtttgaaggtgtgatttcaagcgtaaccggtttcggttta
ttcgttaaaatcaacgagttattgatcgacggcttggtgcatatttcaacattagacaat
gattactatcattatgatgcggacagacaacgtttagtcggcggcagcggtgtgatttac
cgcttaggtgatccggttaaagtgaaagtaatcaatgtgaatttagacgataagaaaatt
gactttgctttaatcgataatctgcgtaaaggcattgccgtcggtaaaaccgccaaacaa
aaagcaaagaaaaatgccggcgataaaccgatttttaaagagcctaaaacaatcaaatcg
gcaaaaggtaaatctaaagctaagggaaaagcgaccaaaacagccaagaaatcgtccggt
cgccaacgtaagaaatag
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