Anas platyrhynchos (mallard): 101790139
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Entry
101790139 CDS
T02816
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla03015
mRNA surveillance pathway
apla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101790139 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
101790139 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apla03019
]
101790139 (PABPC1L)
03041 Spliceosome [BR:
apla03041
]
101790139 (PABPC1L)
Messenger RNA biogenesis [BR:
apla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101790139 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
101790139 (PABPC1L)
Spliceosome [BR:
apla03041
]
Complex C
Other components
Complex C specific factors
101790139 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_occluded
RRM_3
ATP-grasp_2
Motif
Other DBs
NCBI-GeneID:
101790139
NCBI-ProteinID:
XP_038022357
Ensembl:
ENSAPLG00000008415
LinkDB
All DBs
Position
21:2166637..2176717
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AA seq
633 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFS
AFGNILSCKVVCDENGSRGYGFVHFETQEAATRAIKTMNGMLLNDRKVFVGHFKSRKERD
AEFGSRATEFTNVYIKNFGDDMDDDRLREIFSKFGKTLSVKVMMDSSGRSKGFGFVNFEK
HEEAQKAVADMNGKEINGRVVYVGRAQKRLERQSELKRKFEQIKQERVSRYQGVNLYVKN
LDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLATMRALPGPLLGSFQPPPGYFLPPIPQPQTRATF
YSPSPVVPVRPATRWSAQPSRPPPYPSATPILRAAVQPRRLLSNISTMRQASTQVPRVSP
TAQRVANIGTQTVSARVPSSPTLPRGAPQYKYSSAVRNIQPLGSVPPGAPQVGEPAVHIQ
GQEPLTASMLAAAPPQEQKQMIGERLYPLIHAMHASLAGKITGMLLEIDNSELLLLLESP
DSLHAKIEEAVAVLQAHQATETSHKGGAAAFLQ
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccagcggccccggctacccgttagcctctctctacgtgggggacctgcaccca
gatgtgaccgaagccatgctctacgagaagttctcgcccgccgggcccatcatgtccatc
cgagtctgccgggacgtggccacccgccgctcgctgggctatgcctacatcaacttccag
cagccggcagatgctgagcgagccctggacaccatgaactttgaggtgatcaaaggccgg
cccatccgaatcatgtggtcccagcgagaccccgggctcaggaaatcaggggttggaaat
gtatttatcaagaatctggatgactccattgataacaaagccctgtacgacacgttctcg
gcctttgggaacatcctgtcctgcaaggtggtctgtgatgaaaacggatcccgtggttat
ggctttgttcactttgagactcaggaggcagcaactcgggccatcaagaccatgaacggg
atgctgctcaacgaccgcaaggtgtttgttggccacttcaaatcccgcaaagagcgcgac
gcagagtttgggtctagggcaacggagttcaccaacgtctacatcaagaactttggggat
gacatggatgatgacagactgcgggaaatattctccaagttcggaaagactctgagcgtc
aaggtcatgatggacagctctggccgctcgaagggctttgggtttgtgaactttgagaag
cacgaagaagcccagaaggccgtggccgacatgaacgggaaggagatcaacgggcgggtg
gtgtacgtgggccgggcacagaagcggctggagcggcagagcgagctgaaacggaaattt
gagcagatcaagcaggagcgagtgagcaggtaccagggggtcaacctgtacgtgaagaac
ctggacgatgggatagacgatgagcggctgaggaaggagttctctccttacggcaccatc
accagtgcaaaggtgatgacagagggtggccacagcaaagggtttggctttgtatgtttt
tcctccccagaagaggctaccaaggccgtgactgaaatgaacggacggatcgtcagcact
aagcctctctacgtcgccctcgcccaaaggaaagaggagcggaaagcaatcctcaccaac
cagtacatgcagcgattagccaccatgagggccctgcctggccctctccttggctccttc
cagccccctccggggtacttcctaccccccatccctcagccacaaaccagagctactttc
tacagccccagcccagttgtccccgtccgccctgccactcgctggagtgcgcagccctcc
cggcctcccccgtatccttcagccacccccatcctgagagctgccgtgcagccccggcgc
ctgctgtccaacatcagcaccatgagacaggcgtccacccaagtgcctcgcgtgtccccc
acggcccagagagtggccaacatagggacgcagacggtcagcgcccgggtgccctcctcg
cccaccctgccgcggggcgccccgcaatacaagtactcgtcggccgtgaggaacatccag
ccgctgggcagcgtgccgcctggtgccccgcaggtgggagaacccgctgtgcatatccag
gggcaggagccgctgactgcatccatgcttgcagcagcccctcctcaggagcagaagcaa
atgataggtgagcgcctctacccgctgatccatgcgatgcacgcctcgctggctggcaag
atcacggggatgctgctggagatcgacaactcggagctgctgctcctcctggagtccccc
gactccctgcacgccaagatcgaggaggctgtggctgttctccaggcacaccaggccact
gagacgtcgcacaagggcggcgcagcggcgttcctgcagtga
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