Anas platyrhynchos (mallard): 101791891
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Entry
101791891 CDS
T02816
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
apla
Anas platyrhynchos (mallard)
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
apla03000
]
101791891 (RC3H1)
04121 Ubiquitin system [BR:
apla04121
]
101791891 (RC3H1)
Transcription factors [BR:
apla03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
101791891 (RC3H1)
Ubiquitin system [BR:
apla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101791891 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
zf-CCCH_4
FYVE
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
101791891
NCBI-ProteinID:
XP_012955129
Ensembl:
ENSAPLG00000005341
LinkDB
All DBs
Position
8:12655517..12717602
Genome browser
AA seq
1130 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVVPEQQPITLCSGAEDTKHYEEGKKCVEELALYLKPLSSARGV
GLNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQL
SSNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASK
TSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIA
PDQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLEL
LANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMC
RDMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSD
EGGVDLPNRKTSALPNGIVSSGSTVTQLISRGTDSGYETALKPGKMDHLSSSAPGSPPDL
LESVPKNSISALPVNPHPVPARAPTDLPSVSVTKQLQMVPRGSQLYSTQQADMFYQDHRG
AAPPFEPAPYQQGVYYPQTMSRFVRPPPSAPEPGPPYLDHYPPYLQDRVVSSQYTQPQQY
PPMGQPIYPPHYDSRRVYPPVQPYQREEMVRGSPVPIEIPQAAVPSYVPESRDRYQQTES
YCPVAPHLSQIRPSCHRTHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPHPFHSE
EIFVFVQYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMANV
DSKAMRDQRLDMQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPMQAMAVQG
ASTKSIISDYSPYGTHGGWGGSPYSPHQNIPSQGRFNDRERLSMSDVAGHGKQLPSAERE
QQLRMELQQVDHQISQQTQMRGLEAGSNRLLLQREATTLAGQPQPPPPPPKWPGMISSEQ
LSLELHQVEREIGKRTRELSMESQSSLDIKNKLGTTKQTENGQLEPQSKVPAEDLALTFS
SDVPNGSALTQENIGLLSNKTASLSLSEDPEGGGDNHDSQRVGVTPTSAP
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacagattttctctcctgcccaatttgcacacagact
ttcgacgaaacgatccgaaagcccatcagcttgggttgcggccacactgtctgcaagatg
tgcctcaacaagctccaccggaaggcgtgcccctttgaccagaccactatcaacaccgac
attgaactccttcctgtgaactcagccttgctgcagctagtgggtgctcaggtagttcct
gagcagcagccaattactttatgtagtggagctgaagataccaagcattatgaggagggc
aagaaatgtgtggaagaattagcattgtacctcaaaccactcagcagcgcaagaggtgtg
ggtcttaacagtactactcagagcgttctaagtcgtcctatgcaaaggaaacttgtgacg
ctagttcactgccagctagtggaggaagaaggacggatcagagctatgcgtgctgcacgg
tcacttggtgaaagaacagtcacggagctcattcttcagcatcaaaatcctcagcaactt
tcttctaacctttgggctgcagtgagagccagagggtgccagttccttggcccagccatg
caagaggaggctttaaagctggttctgctagctctggaagatggatctgctttgtcacgg
aaggtcttagttctctttgtggttcagagactggagccacgatttcctcaggcttctaaa
actagcattgggcatgttgtccagcttctttacagagcctcatgcttcaaggtgacaaag
cgtgatgaggattcctccctgatgcaattgaaagaggaatttcggacttacgaagctctg
agaagggaacatgattcccagattgttcaaattgctatggaagcaggtttacgcattgca
ccagatcagtggtcctccctgttatacggagaccaatctcacaaatcccacatgcagtct
atcattgataagttgcagaccccagcctcgtttgcacagagtgttcaggaattaactatt
gctctccagaggactggagatccagctaacctgaatcgtcttcgacctcaccttgagctc
ctggcaaatattgatcccagtccagatgctccacctccaacatgggaacaactggaaaat
ggactggttgccgtgaggacagttgttcatggcttagttgattatatccagaatcacagc
aagaaaggaacggatcagcaacagcctcctcagcacagcaagtacaagacatatatgtgc
cgagacatgaaacagagaggaggatgcccccgaggagctagctgcacctttgcacattca
caggaagagctagaaaaatttcgtaaaatgaacaagcgtctggttccaagaagacccctg
agtgcctccctgggccagctgaacgaggtgggcctaccttcaggagctatcctctcggat
gaagggggagtggacttgcccaacaggaaaacctctgctctgccaaatggaattgtgtca
tcaggcagcacagtgacgcaacttatttctcgagggactgactccggttacgaaactgct
ctgaagccagggaagatggaccatctgagtagcagtgcccctggatcccctcctgacttg
ttggaatctgtccccaagaactctatttctgccttaccagtgaaccctcatcctgtgcct
gctcgggcgccaacagatctgccttcagtgtctgtcaccaagcagttgcaaatggtaccg
cgtgggtctcagttgtatagtactcagcaagcagatatgttttatcaggatcacagggga
gctgcccccccgtttgagccagcaccataccaacaaggagtttactatcctcagaccatg
tctcgctttgtgcgacctcctccatcagctcctgaacctggtccaccttatctagaccat
tacccaccctacctgcaggatcgtgtggtgagctcacagtacacacaaccgcagcagtat
cctcctatgggacaacccatttacccaccacactatgacagtcgtcgtgtgtaccccccc
gtgcagccatatcaacgagaggagatggtccgaggaagccctgtgcctattgaaattccc
caagcggctgtaccctcctatgtacctgaatccagggacagataccagcaaacagagagt
tattgcccagtggctccacatctcagtcagatcagaccttcatgccacaggactcatccc
agcctggatgaacttcaccgacgaaggaaggagatcatggcccagctagaggagaggaaa
gtgatttctccacctccttttgcaccttcaccaaccttgcctcatccttttcattcggag
gagatttttgtttttgtacagtacttggatgaagacctgaaggtagctgggaagtacaaa
ggaaatgactacagccagtattctccctggtcctgtgacaccatcggctcctacattgga
accaaagatgcaaaacccaaagatgttgtggcagcaaggagcgtggagatggcgaatgta
gatagtaaagccatgcgtgaccaacgattggacatgcagagaagagcagcagagactggc
gatgatgacctcattccatttggagaccgaccaactgtgtcgagatttggggctatctct
cgtacttccaaagcaatgtaccagaattctggtcccatgcaggccatggcagttcaggga
gcttccaccaaatcgattatttcagactacagtccttatggaactcatggtggctgggga
ggctctccttattctccccatcaaaatataccttctcagggacgtttcaatgacagggag
agactgtccatgtcagatgtggctggtcatggaaaacagttgccttcagctgagcgggag
cagcagctgcgcatggagctgcagcaagtggaccaccagattagccagcagacacaaatg
cgaggactagaggctggtagtaacaggctgctgttgcagagggaggcgactaccctggca
ggccaaccacagcccccacccccacctcccaagtggcctgggatgatctcaagtgagcag
ctgagcttggagctacaccaggtggaaagggaaattgggaagagaacccgtgagctgagc
atggagagccagtcttcactggatataaaaaacaaactgggcaccactaaacagacagaa
aatggacaattagaaccgcaaagcaaggttccagctgaggacctcgcactaacattcagc
agtgatgttccaaatggatctgccttgacacaggagaacatcggcctcctgtcaaacaag
acagcatctctcagcctgtcagaggacccagagggaggaggagacaaccacgactcccag
agagtgggagttacgcccacatctgctccatga
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integrated database retrieval system
