Anas platyrhynchos (mallard): 101792737
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Entry
101792737 CDS
T02816
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101792737 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
apla03041
]
101792737 (DHX38)
Enzymes [BR:
apla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101792737 (DHX38)
Spliceosome [BR:
apla03041
]
Complex C
Other components
Step II factors
101792737 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
Flavi_DEAD
nSTAND3
T2SSE
PhoH
Microtub_bd
SRP54
AAA_16
AAA_30
AAA_7
DUF6449
Motif
Other DBs
NCBI-GeneID:
101792737
NCBI-ProteinID:
XP_027322476
Ensembl:
ENSAPLG00000015279
LinkDB
All DBs
Position
12:344741..354821
Genome browser
AA seq
1237 aa
AA seq
DB search
MAEAEAGERSLHRLAGTGPEAGPGGLVLRGRSAAAEQHVFKAPAPRASLLGLDVLAAQKR
REREEEAAAGGKRSRVCSYRDWEDGRDEAGSPEEDEEEEEGGRSARSGRKDRHYRSVHVE
TPSYTGGVSEEFWERSRQRERDRREHGVFASSKEEKERKKERSRDRNHDRKRDREERDRS
HHSSRSERDGSSERSSRRSEPESPRHRPKDAATPSRSSWEEDDSGYSSSRRSQWESPSPT
PSYRDSERSHRASSLRDTDRRDRDRSVRSRCSDKTPLPTPSYKYNEWADDRRHLGATPRL
SRGRGRREDGEEGIAFETEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEEYVKK
REQHLHKQKQKRISAQRRQINEDNERWETNRMLTSGVVHRIEVDEDFEEDNSAKVHLLVH
NLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQLVRKHREQKERKRAQHKHWEL
AGTKLGDIMGIKKEEEKDEMVTEDGKVDYKTEQKFAEHMKEKSEARSEFAKKKSILEQRQ
YLPIFAVQQELLSILRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAA
MSVAKRVSEEMGVRLGEEVGYAIRFEDCTSENTIIKYMTDGILLRESLREADLDNYSAII
MDEAHERSLNTDVLFGLLREVVARRSDLKLVVTSATMDADKFASFFGNVPIFHIPGRTFP
VDILFSKTPQEDYVEAAVKQALQVHLSGAPGDILVFMPGQEDIEVTSEQIVEHLEELEKA
PALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKV
FNPRIGMDALQIYPISQANANQRAGRAGRTGPGHCFRLYTQSAYKNELLTTTVPEIQRTN
LANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFP
LDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQVREKFAVPESDHLT
YLNVYLQWKNNNYSTLWCNQHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDVVR
KCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYM
QCVTAVDGEWLAELGPMFYSIKHAGKSRQENRRRAKEEVSAMEEEMALAEEQLRARREEQ
ERRNPLGSARSTKIYTPGRKEQGEPLTPRRTPARFGL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcggaggcgggcgagcggtcgctgcaccggctggccgggacgggccccgag
gccgggccgggcgggctggtgctgcgggggcgcagcgccgcggccgagcagcacgtcttc
aaggcgccggcgccgcgggcctcgctgctgggcctggacgtgctggcggcgcagaagcgg
cgggagcgcgaggaggaggcggcggccggcgggaagcggtcccgggtgtgctcctacagg
gactgggaggacggccgcgacgaggcgggcagccccgaggaggacgaggaggaggaggag
ggcggccggagcgcccggagcggccgcaaggacaggcattatcgttctgtgcatgtggaa
acaccttcctacacgggaggcgtcagcgaggaattttgggaacgcagtcggcagcgggaa
agagaccgccgtgagcatggtgtctttgcgtcctccaaggaggaaaaggaacggaagaag
gagcgcagcagggatcggaaccacgatcgtaaacgagaccgcgaggagcgggacagaagt
catcacagcagcaggtcagagagagacggctcatcagaacggagcagcaggaggagcgaa
ccagagagtcccaggcatcgtcctaaagatgcagccacgccgtctcgctccagctgggag
gaagatgacagtggttacagcagttcccgccgctcacagtgggaatctccgtccccaaca
ccttcctatcgggactcagagcgcagccaccgggcatcatccttgcgggacacggatcgg
agagaccgggacaggtctgtaagaagcaggtgctcggacaagacgccgctgcccacaccg
tcgtacaagtataacgagtgggctgacgaccggagacacctgggggccacaccacggctg
tccaggggcagagggcgacgtgaggacggggaggagggcatcgccttcgagacagaggag
gaacggcagcagtgggaggacgaccagcggcaagctgaccgggactggtacatgatggat
gagggctacgacgagtttcacaaccccttggcctactcctccgaggagtatgtgaagaag
agggagcagcacttgcacaaacagaagcagaagcgcatctctgcacagcggcggcagatc
aatgaggacaacgagcggtgggagacaaatcgcatgctgaccagtggtgtagttcatcgg
attgaagtagatgaagattttgaagaggataattcagccaaagtgcatctgctggtgcac
aatctggtgcctccattcctagatgggaggattgtcttcaccaagcagccagagccggtc
atccctgtcaaagatgccacttctgatttggccatcatagctcggaaaggcagccagctg
gtgcgcaagcatagggagcaaaaggagcgtaagagggctcagcataaacactgggagctg
gcaggcacaaaactgggagacattatgggaatcaagaaagaggaggagaaggatgagatg
gtgacagaagatggcaaagtggattacaagactgagcagaagtttgctgaacacatgaaa
gaaaaaagtgaagcaaggagtgagtttgccaagaagaaatcgatcctggagcagagacag
tatctgcccatctttgctgtgcagcaggagttgctctccatcctcagggacaacagcatt
gtgattgtggtaggggagacgggtagtgggaagacaactcagctgacgcagtacctccat
gaggacggctacacagactacggcatgattggctgcacccagccccgcagagtggcagcc
atgtctgttgccaagcgggtcagcgaagagatgggagtgcgtctgggagaggaggtgggc
tatgccatccgctttgaggactgcacgtcagagaacacgataatcaaatacatgacagat
gggatcctccttcgtgagtcactgcgagaggctgacctggacaactacagtgctatcatc
atggatgaggcgcatgagcgctcactcaacactgatgtgctctttggcctgttacgggag
gtggtagcacgacgctcggacctgaagcttgttgtcacctctgccaccatggatgcagat
aagtttgcctccttcttcgggaacgttcccattttccacattcctgggcgcacttttcct
gttgatattcttttcagcaagaccccacaagaggattatgtggaggctgctgtgaaacaa
gccctgcaggtccatttgtctggtgctcctggtgatatccttgtcttcatgcctggccag
gaggacattgaggtaacctcagagcaaattgtggagcacctcgaggaactggagaaggcg
cctgctcttgctgtactgcccatctattctcagctgccctcagacttacaggccaagatc
ttccagaaggctccagatggggtgaggaagtgcattgttgctactaacattgcagagact
tcactgacagtggatggcatcatgtttgtgattgattctggctactgcaagttgaaggtt
ttcaatccccgtataggcatggatgcgctgcagatctatcccatcagtcaagccaatgcc
aatcagagggcaggccgagctggcagaacgggcccaggtcactgcttcaggctctacacc
cagagcgcctacaagaatgagctgctaacaaccacagtgcccgagatccagcgcaccaac
cttgccaatgtagtgcttttgctcaagtccctgggtgtgcaggacctgctgcagttccac
ttcatggatccaccacctgaggacaacatgctgaactccatgtaccagctgtggatcctg
ggagccctggataacacaggtggtctgacatcaacaggacgtctcatggtggagttccca
ctggaccctgcactctccaaaatgctcattgtttcctgtgacatgggctgcagctctgag
atcctgctcattgtctccatgttgtctgtgcctgccatcttctatcggcctaagggtcga
gaggaagagagtgaccaagtgcgggagaagtttgctgtcccagagagcgatcacttgact
tacctgaatgtttatctgcagtggaaaaacaacaactactctactctgtggtgcaaccag
cacttcattcatgccaaggccatgaggaaggtgcgggaggtgcgtgcccagctcaaggac
attatggtgcagcagcggatgagcctagcatcctgtggtactgactgggatgttgtcagg
aagtgcatctgtgctgcgtatttccatcaagctgcaaagctgaagggcattggggagtac
gtgaacatccgcacaggcatgccctgtcacctgcatcccacaagctctctgtttggcatg
ggctacacaccagactacattgtgtatcatgagctggtcatgaccaccaaggaatacatg
cagtgtgtcactgctgtggatggagagtggctggcagagctgggacccatgttctacagt
atcaaacatgctggcaagtcgcgccaggaaaaccgccgccgtgccaaggaggaagtgtct
gccatggaggaagagatggctctggctgaggagcagttgcgtgcccgccgggaggagcag
gagcgccgtaacccgctgggcagcgcaagatctactaaaatctacacacctgggcggaag
gagcagggggagcccctgacaccacgacgcaccccagcccgctttggcctctga
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integrated database retrieval system
