Anas platyrhynchos (mallard): 101793853
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Entry
101793853 CDS
T02816
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101793853 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apla03019
]
101793853 (PARN)
Enzymes [BR:
apla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101793853 (PARN)
Messenger RNA biogenesis [BR:
apla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101793853 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
Thc1_RRM
T6PP_C
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
101793853
NCBI-ProteinID:
XP_027324665
Ensembl:
ENSAPLG00000013914
LinkDB
All DBs
Position
15:complement(341654..412140)
Genome browser
AA seq
636 aa
AA seq
DB search
MEVIRSNFKDNLSKVCEAIEEADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHTEDKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNTTKCPVTIPEDQKKF
IEKVVEQIEELLKNEENESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIV
ISKVDDEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQF
YCPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKEVPFSPPKV
ESAEGFPSYDTSSEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKQAKRKCTEDSWKEMERKRLK
TQCAPYVSQSRYYCVNSFTGNSTVGKRSMSPIQEETGSDDVEEGEDPEYNQTDSCAEPLP
DSKKRAKKFKKIKKEQVPAGSFTSSSTEIFEVPETW
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgatcagaagcaattttaaggataacctgagcaaagtctgtgaagccatcgaa
gaggcggacttcctggccattgatggggagttttcagggatcagcgatgggccttctgtt
agtgcattaaccaatggctttgacactccagaagaaaggtatcagaaacttaaaaagcat
tccatggattttttgctctttcagtttggcctttgcacttttaaatatgaccacactgaa
gacaagtatataatgaagtcatttaatttctatatttttccaaaaccctttaacagaagt
tcaccagatgtcaagtttgtctgtcagagttcaagtatagattttttagcaaaccaagga
tttgattttaataaagtttttcgcaacggaattccgtatttaaatcaggaagaagaaaga
cagctaagggaacagtatgatgaaaaacgttctcaggccaatggtgcaggatctctctcc
tatatttctcccaataccacaaaatgtcctgtcacaattcctgaagatcagaaaaaattc
attgagaaagtagtggaacagatagaagaattgttaaagaatgaagaaaatgaaagtttg
gaactggagccatgtacaggatttcagaggaaattaatttatcagaccttgagctggaag
tatccaaaaggtatccatgttgaaactctggagtcagataagaaagagagatatattgtt
attagcaaggtagatgatgaagaacgaaaaagaagagaacagcagaaacaagcaaaggaa
caggaagaactgaatgatgcggtaggattttccagagttgttcatgctattgcaaattct
ggcaagcttgttattgggcacaacatgctgcttgatgttatgcatactatacaccagttc
tattgtcctcttcctgatgacctaagtgagttcaaagaagtaacatcatgtgtctttccc
cggctattggatacaaaactgatggcaagtacacaaccttttaaggagatcattaataat
acgtcccttgcagaactggaaaaacgtttaaaagaagttccattcagtcctcctaaagtt
gaaagtgcagaaggatttccaagttatgatacctcttctgaacagcttcatgaagcggga
tatgatgcttacattactggactgtgcttcatctccatggctaatttcctaggttcgttc
ctcagtcctccaaaaaatcatgtgtctgctagatcaaaactcatagaacccttttttaac
aagctatttcttatgagagtaatggacattccatatctgaatttggaaggaccagactta
cagcctaaacgagatcatgttcttcatgttacttttcccaaagagtggaagacgagtgac
ctttaccagctttttagtgcctttggtaacattcaggtgtcatggatagatgacacatca
gcatttgtatcattaagtcagccagaacaagtacaaatagctgtaaacaccagcaggtat
gctgaaagttataggatccagacatatgctgaatatgttgagaaaaaacatgaagaaaaa
caggcaaagagaaaatgtacagaagatagttggaaggagatggagagaaagcggttaaaa
actcaatgtgcaccttacgtttcccagagtcgatactactgtgttaacagttttacaggt
aacagtacagtgggaaagagaagcatgagtcctattcaggaagaaactggttctgatgat
gtggaagagggagaagatccagaatacaatcagacagactcctgtgcagagcccctccca
gatagtaagaagagagccaaaaagttcaaaaagatcaagaaagaacaagttccagcagga
agcttcacaagtagttccactgaaatttttgaagtccctgaaacatggtag
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