Anas platyrhynchos (mallard): 101794091
Help
Entry
101794091 CDS
T02816
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla03015
mRNA surveillance pathway
apla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101794091 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
101794091 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apla03019
]
101794091 (PABPC1)
03041 Spliceosome [BR:
apla03041
]
101794091 (PABPC1)
Messenger RNA biogenesis [BR:
apla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101794091 (PABPC1)
mRNA cycle factors
Stress granule specific factors
101794091 (PABPC1)
Spliceosome [BR:
apla03041
]
Complex C
Other components
Complex C specific factors
101794091 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_7
RRM_5
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
101794091
NCBI-ProteinID:
XP_027308335
Ensembl:
ENSAPLG00000001129
EnsemblRapid:
ENSAPLG00030026459
LinkDB
All DBs
Position
2:23609757..23625178
Genome browser
AA seq
637 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPANQLAQLARPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMST
QRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHV
QGQEPLTASMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLES
PESLRSKVDEAVAVLQAHQAKEAAQKAVNNPTGVPSV
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcgtccctctacgtgggggacctgcacccc
gatgtgaccgaggccatgctctacgagaagttcagccccgccgggcccatcctctccatc
cgcgtctgcagggacatgatcacccgccgctcgctcggatacgcctacgtcaacttccag
cagccggccgacgctgaacgagctttggataccatgaactttgatgtcattaaaggcaaa
ccagtgcgcatcatgtggtctcagcgcgatccatctctacgcaaaagcggtgtaggaaac
atcttcatcaaaaacttggacaaatcaattgataacaaagcgttgtatgacacattttct
gcttttggaaacatcctttcttgtaaggtggtatgtgacgaaaatggatccaagggttat
ggattcgtacattttgagacacaagaagctgcagaaagagctattgaaaaaatgaatggt
atgctgcttaatgaccgcaaagtattcgttggaaggtttaaatcccgtaaggaacgtgag
gcagagcttggagccagagcaaaggaattcaccaatgtttacatcaagaattttggagaa
gacatggatgatgagagacttaaggaactctttggcaagtttggtcctgccttaagtgtg
aaagttatgactgatgagagtggaaaatccaaaggcttcggcttcgttagttttgaaaga
catgaagatgcccaaaaagctgtagatgagatgaatgggaaggagctcaatgggaaacaa
atctatgttggccgggctcagaaaaaagtggaaagacagacggagctgaagcgtaaattt
gagcaaatgaagcaggacaggatcaccagataccagggcgtaaacctttacgtgaaaaat
cttgatgatggcattgatgatgaacgccttcgaaaagaattctccccatttggtacaatc
actagtgcaaaggtcatgatggaaggtgggcgcagcaaaggatttgggtttgtttgcttt
tcatcaccagaagaagccaccaaagctgtcacagagatgaatggtagaattgtggctact
aaaccattatatgtagctctagcgcagcgtaaagaagagcgccaggctcatctcaccaac
cagtatatgcagagaatggcaagtgtaagagcagtacctaatcctgtaatcaacccctac
cagccagcacctccttcaggttacttcatggcagctatcccacagactcagaaccgtgct
gcatactatcctgctaatcaacttgctcaacttgctagacctagtcctcgctggactgct
cagggtgccagacctcatccattccaaaacatgcctggtgctatccgcccagcagcgccc
agaccaccatttagtaccatgagaccggcttcttcacaagttccacgagtcatgtcaacg
cagcgtgttgctaatacatcaacacaaacaatgggtccacgtcctgcagcagcagctact
gcagctactcctgctgtacgcacagtaccacaatacaaatatgctgcaggtgttcgcaat
cctcagcagcatcttaatacacagccacaggttgctatgcagcagcctgctgtccatgtg
caaggtcaggaaccattgactgcttccatgttggcttctgccccaccgcaagaacaaaag
cagatgttaggtgaacgtctatttcctctcattcaaagcatgcaccctactctggcgggt
aagatcactggtatgctgttggagattgacaactctgaactccttcacatgctcgagtct
cctgaatctcttcgttcgaaggttgatgaagctgtagccgtactacaagcccaccaagct
aaagaggctgctcaaaaggcagttaataaccccactggggttccaagtgtttaa
DBGET
integrated database retrieval system