Anas platyrhynchos (mallard): 101794556
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Entry
101794556 CDS
T02816
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla04140
Autophagy - animal
apla04148
Efferocytosis
apla05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
101794556 (VPS39)
04148 Efferocytosis
101794556 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
101794556 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
apla04131
]
101794556 (VPS39)
Membrane trafficking [BR:
apla04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
101794556 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
WD40_like
Lgl_C
SAM_CEP-1_C
Motif
Other DBs
NCBI-GeneID:
101794556
NCBI-ProteinID:
XP_027315296
Ensembl:
ENSAPLG00000016003
LinkDB
All DBs
Position
5:complement(35114339..35136055)
Genome browser
AA seq
892 aa
AA seq
DB search
MHDAFEHVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIKKDMGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLVPALPTPACVDFCCLRPQNNIYVHDLLTFQQITTVSKA
KGASLFTCDLQHSDTGEEVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCE
NSICVGFKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPVADGKVAVGQDDLTVVLNEEGV
CTQKCALNWTDIPIAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGTNI
IYVASNHFVWRLIPVSIATQIQQLLQDKQFELALQLAEMKDDSDSEKRQQIHHIKNLFAF
NLFCQKRFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPGLSGAELEKAHL
ALIDYLTQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVA
LVAPLLRLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLK
GHERTVQYLQHLGTENLHLVFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDKVLSFLIE
NFKSLAIPYLEHIIHVWEEIGADFHNCLIQLYCEKVQGLMKEYLHSLPADKTPVPAGEEG
GDLGDYRKKLLLFLEKSSCYEPSRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILK
DTNMAENYCHKHYDRNKDGNKDVYLSLLRMYLSPPSVHCLGPIKMEVLEPQANLQAALQV
LELHHSKLDTTKAINLLPANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQE
ERILHQQVKCIITEEKVCTVCKKKIGNSAFARYPNAIVVHYFCSKEVNTLDT
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagcatgtgccgatcctggagaagctgccgctgcagatcgactgc
ctggcggcctgggaggaatggctccttgttggtaccaaacaagggcatcttcttctttac
aggatcaagaaagacatgggttgcaataggtttgaagtgacactagagaaatccaacaag
aacttctcaaaaaagattcagcagattcatgttgtttctcagtttaaaattctggtcagt
ctgttagtcccggcacttccgactccagcatgcgtagatttctgctgcctgcgtcctcaa
aataacatttatgtccacgacctgttgacatttcaacaaatcactacagtttccaaggca
aaaggtgcatctcttttcacttgtgatcttcagcattcagatacaggggaagaggtgctg
agaatgtgtgtggcagtgaggaagaagctacaactttatttttggaaggacagagagttc
catgaactacagggggacttcagtgtacctgatgtacccaagtctatggcctggtgtgaa
aattctatctgcgtaggttttaagagggactactatctgatacgggtggatggaaaagga
tccatcaaagaactgtttccaacggggaagcagttggaaccactggttgcccctgtggca
gatggaaaagttgcagttggtcaagatgatctaactgttgtgctcaatgaagaaggggtc
tgtacccagaaatgtgccttgaattggacagatattcctatagccatggagcaccagcct
ccctacatcattgctgttctgccgaggtatgtggagatccgcacgtttgaaccccgactg
ctggtacagagtattgagctacagagaccacgcttcatcacctctggagggacaaatatt
atatatgtggcaagtaatcactttgtttggcggctcatcccagtgtccatagccacacag
atccagcaacttcttcaggataaacaatttgagttggctttgcagttggcagaaatgaaa
gatgattcagatagtgagaagcgacaacaaatacaccacatcaagaacctctttgccttc
aacctcttctgtcagaagcgctttgatgaatccatgcaagtttttgccaaacttggtaca
gatcccactcatgtgatgggtctgtatcctgacctcctgcccacagattacaggaaacag
ctacagtatcccaaccccctgccagggctctcaggggcagagctggaaaaggcacattta
gctctgatagactacctaactcaaaaaagaagtcaactggtaaagaagctaaacgattct
gaccatcaatccagtacttcgcccctcatggaaggaacacccacaatcaaatccaaaaag
aagctgctacaaattattgataccacactattgaagtgttacctccatacaaatgtagca
cttgtggcacccttgctacgtctggagaacaatcactgccatattgaggagagtgagcat
gtactaaagaaagcacataaatacagtgagctgataatactgtatgagaagaaaggtttg
catgagaaagcattacaggtactggtggatcagtcaaagaaagccaactcacctttgaag
ggtcatgagaggacagtgcaatatctgcagcatttgggcacagagaacttgcacttagta
ttttcttactctgtctgggtgttaagagattttcctgaagatggactgaagatatttaca
gaagacctccctgaagtggaagctttgccacgagataaagtgctcagtttcttgatagaa
aacttcaaaagtttggctattccttatctggaacacatcattcatgtgtgggaagaaatt
ggtgcagactttcacaattgtctgatccagctgtactgtgagaaagtgcagggcttaatg
aaagaatatctccattctttacctgcagacaaaactccggtgcctgctggggaggaagga
ggagacttgggggattaccggaaaaaacttcttctttttttggagaagtctagctgttat
gaacctagtcgactaattagtgactttccctttgatggtcttctagaagaacgtgctctg
ctcttgggtcgtatggggaagcacgagcaagctctgtttatttatgttcatattttgaag
gacaccaacatggccgaaaactactgccataaacattacgacagaaacaaagatggcaac
aaagatgtctatctatcccttctccggatgtatctctccccacctagtgttcattgccta
gggccaatcaagatggaagtgctggagcctcaagccaatctgcaggctgctctgcaggtg
ttggagctgcatcacagcaaactggataccaccaaggcaataaaccttctaccagcaaat
acacagattagtgagattcgaatcttcctagagaaagtccttgaagaaaatgcccaaaaa
aagagattcaatcaagtactcaagaatcttctccatgctgaatttctgagggtccaggag
gagcgaattttgcatcagcaagtaaagtgcataattacagaggagaaggtctgcactgta
tgtaaaaagaagataggcaacagtgcatttgcccgataccctaatgcaatagttgtgcat
tatttctgctccaaagaagttaatacattggacacctga
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