Anas platyrhynchos (mallard): 101795314
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Entry
101795314 CDS
T02816
Symbol
RTCB
Name
(RefSeq) LOW QUALITY PROTEIN: RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
apla
Anas platyrhynchos (mallard)
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
apla03016
]
101795314 (RTCB)
Enzymes [BR:
apla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
101795314 (RTCB)
Transfer RNA biogenesis [BR:
apla03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
101795314 (RTCB)
Prokaryotic type
tRNA splicing ligases
101795314 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
101795314
NCBI-ProteinID:
XP_027305723
Ensembl:
ENSAPLG00000008226
LinkDB
All DBs
Position
1:56217840..56228957
Genome browser
AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLDKLDKNCWRIKKGFVPNMHVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
VEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaatgacgagctgcagttcctggacaagctggacaagaactgctgg
cggatcaagaagggcttcgtgcccaacatgcatgtggagggtgttttctacgtgaacgac
cctctggagaagctgatgttcgaggagctgcgcaacgcctgccgcggggggggtgcggga
gggtttttgcccgctatgaagcagatcgggaatgtggcagcgctgccgggcatcgttcat
agatcgatcggcctgccagatgtccattcgggctatgggtttgccattggcaacatggct
gcctttgacatgaatgatcctgaagcagtggtttcaccaggtggtgtcggatttgacatc
aactgtggtgtccgcttactgcgtacgaatttggatgaaagtgacgtgcagcctgtgaag
gagcagctcgcccaagctatgtttgaccatattcctgttggtgtcggctccaagggtgtc
atccccatgaatgccaaggatttggaagaggcgctagagatgggtgtggactggtctctc
cgggaaggctatgcctgggcagaggacaaggagcactgtgaggagtatggaagaatgctg
caggccgatcccaacaaggtctcctcaagagcaaagaaaaggggtctgcctcagctgggg
accctgggagcaggaaatcattacgccgagatccaggtggtggacgacatttacaacgaa
tacgctgcccggaagatgggcatcgaccacaaagggcaagtgtgcgtcatgatccacagc
ggcagcaggggtttgggccaccaagttgccacagatgcattggtggctatggaaaaagct
atgaaacgggacaaaatcatagtgaacgatcggcaactagcatgcgccaggattgcctct
gtagaaggacaggattacttgaagggaatggcagctgctggaaattatgcgtgggtcaac
cgctcttctatgacttttctaacgaggcaggcctttgccaaagtcttcaacaccacccca
gatgacctcgatatgcacgttatctatgatgtgtctcacaacattgccaaagtggagcaa
cacgtggtggatgggaaggagcggactctgctggtgcacagaaaagggtcaaccagagcc
ttccctcctcaccatcctcttattgctgttgattatcaactgaccggacagcctgttttg
atcggtgggactatgggcacctgtagctacgttcttactggcacggagcaaggcatgact
gagaccttcggaactacttgccatggagctggtcgtgcactgtctcgagccaaatctcga
cgtaacttggacttccaggatgtattggacaagctggctgacatgggcattgccatccgt
gttgcttctcccaaactggtcatggaagaagcaccagagtcttacaagaacgtgacagat
gtggttaacacctgccatgacgctggcatcagcaagaaagccataaaattgagacctatt
gctgttataaaaggctag
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