Anas platyrhynchos (mallard): 101795326
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Entry
101795326 CDS
T02816
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X2
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101795326 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apla03019
]
101795326 (PNLDC1)
Enzymes [BR:
apla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101795326 (PNLDC1)
Messenger RNA biogenesis [BR:
apla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101795326 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
MCCD1
Motif
Other DBs
NCBI-GeneID:
101795326
NCBI-ProteinID:
XP_012951605
Ensembl:
ENSAPLG00000007014
EnsemblRapid:
ENSAPLG00030011706
LinkDB
All DBs
Position
3:complement(48795214..48807844)
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AA seq
564 aa
AA seq
DB search
MWGWFCAFGMRALGAVGRKAGTCRGRHLKQPLLWNDPRGKGRKRDAAALAVLRAGGLDME
FTGLHSAVPQNNQPSLFDSPAERYLKVRQSVQCFTVTQLGLAIFTKENSNKYVVHSYNFF
LFPSTLGVTDVEFTLSASSIQFLSHHGFDFNKFLKDGIPYMNEVQEESLSQRLSEGSWRV
CSAVGRNVMKKAIDEVTRWIVAAEEGETMTLKDLSGSHMLEVQLVLRQALQNVWTQPLED
SEVVVKKVSLQQRRLLENSSYDYCRKELILTSARGFTNLFQILVEAKKPLVGHNMFMDLC
HLHDKFYKPLPESYEEFKRNIHNLFPVLIDTKTVTKSIWRNHRFPRVSTLLEVYEVLCSN
NLNPTDPTGPVITLASDCSRYAEKKSPHEAGYDAFLCGSVLLKSAHLLLHRVTKCSDTVE
ADPSFSQYLTALAEYLNKVNFIRGGASSINFSGEDVPSQHPPPLVVRVRGWPQMNERQIY
QELKALCRFDVRRLSENQFILLSNKFKHVRRVLRNYKHHPHLQISVYRHWRHSPRVNCLL
QVSGIVALWSLLAFVLGGRPCCSS
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgtgggggtggttttgtgctttcggaatgagagccttgggggctgttggaaggaaagcg
gggacatgcagagggaggcacttaaagcagcctttgctttggaatgacccccgagggaag
gggagaaagcgggatgctgctgcactcgctgtgttacgggcaggcggcctcgatatggag
ttcactggcttacactcggctgtcccacaaaataaccagcccagcctgtttgattcccct
gccgagcggtacctgaaggtcaggcagagcgtgcagtgcttcacagtcacccagctgggg
ctggcaatattcacaaaagaaaattcaaacaagtatgtggtgcattcatacaactttttt
ctctttccgtcaacattgggagttacggatgttgaattcaccctctctgcgtctagcatt
caattcctgtctcatcatggctttgactttaataagttcctgaaagatggaatcccgtac
atgaacgaggtacaggaggagagcctgagccagcgtctctcagagggcagctggagagtc
tgcagtgctgtgggcaggaatgtgatgaagaaggctattgatgaagtgaccaggtggatc
gtagcagcagaggaaggggagaccatgactctgaaggatctgagtggctctcacatgctt
gaagttcagctggttctgagacaagcgctccagaatgtttggacacagcctcttgaagac
agtgaggtagtggtgaaaaaagtgagtctgcaacaacgccgacttctggaaaactcttct
tatgactactgccggaaggagctgattctcacgtctgcccggggcttcaccaaccttttc
cagatacttgttgaagctaaaaagccactggtgggacataacatgttcatggacctctgt
catcttcatgacaagttctacaaaccccttccagaaagctacgaggagtttaaaaggaat
attcacaacctgttccctgtcctcatagacaccaagactgtaacaaaatccatctggagg
aatcatcggtttcctcgagtatctactcttttggaggtgtatgaggttctgtgcagcaac
aacctaaaccccacagatccaacgggcccagtgattactctcgcaagtgactgttcacga
tacgctgagaagaaatcccctcatgaggcaggctatgatgcatttctctgtggttcagtt
cttctgaagtcagctcatttgctactacacagagtgacaaaatgtagtgatacagtggag
gctgatccttctttctctcagtatctcactgcgttagctgagtacctgaacaaggtgaat
ttcatccgaggtggtgcctcaagcattaatttttctggggaagatgttcccagccaacat
ccccctcccttggttgtccgtgtccgaggctggccacagatgaatgaaaggcagatttac
caggagttaaaagctctttgtcgctttgatgtcagaaggctatcagagaaccagttcatt
ttgctctccaataaatttaagcatgtcaggcgtgttctccgcaattataaacaccaccct
catctgcagatctctgtctatcgccactggaggcactctccacgtgtgaactgcttgttg
caagtgtctggtattgtggcactgtggtctctcttggcctttgtactcgggggacgtcct
tgctgttcatcataa
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