Anas platyrhynchos (mallard): 101796914 Help Entry 101796914         CDS       T02816                                  Symbol LIG1 Name (RefSeq) DNA ligase 1 isoform X1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism apla  Anas platyrhynchos (mallard) Pathway apla03030   DNA replication apla03410   Base excision repair apla03420   Nucleotide excision repair apla03430   Mismatch repair Brite KEGG Orthology (KO) [BR:apla00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     101796914 (LIG1)    03410 Base excision repair     101796914 (LIG1)    03420 Nucleotide excision repair     101796914 (LIG1)    03430 Mismatch repair     101796914 (LIG1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:apla03032]     101796914 (LIG1)    03400 DNA repair and recombination proteins [BR:apla03400]     101796914 (LIG1) Enzymes [BR:apla01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      101796914 (LIG1)     6.5.1.6  DNA ligase (ATP or NAD+)      101796914 (LIG1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      101796914 (LIG1) DNA replication proteins [BR:apla03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     101796914 (LIG1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      101796914 (LIG1) DNA repair and recombination proteins [BR:apla03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      101796914 (LIG1)    NER (nucleotide excision repair)     Other NER factors      101796914 (LIG1)    MMR (mismatch excision repair)     Other MMR factors      101796914 (LIG1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DDR Motif Other DBs NCBI-GeneID:  101796914 NCBI-ProteinID:  XP_038035116 Ensembl:  ENSAPLG00000013201 LinkDB All DBs Position 5:55300848..55307505 Genome browser AA seq 775 aa AA seqDB search MAAPPRLPPSSRGRAPPAPPPPPRSRRRSPPGTPPGTPPRSRHRWKEGTPMGGGRPPPGP RSETPRALYPPHPPTPPGAPPTPGVPGDEVGPPPAKRCRQAPSDQDRGPLAASSPPPLDP SQYDPARSGYHPLQDACWGHGQSVPYLAVARTFERIEEASARLKIIETLSNFLRSVLALS PGELLPCLRLCLNRPGAPSEGLELGIGESLLTRALAQATGRQLAQIRSEAQDKGDLGLVA ESSRCTQRTVVAPAPLSAAGVLGKLREMATMSGNASANKKIGIIKGLFVACRHSEARYLV RSLSGKLRIGLAEQSVLTALAHAVALTPPGQGWPPAVLDAGQGMAPEARRAWLEEQSRIL KQTFCELPDYAAIVPVLLEHGLEKLPQHCGITPGVPLKPMLAQPARGVGELLKRFEEAAF TCEYKYDGERAQIHVLESGAVFIYSRNQENTTAKYPDLVDRIPKVLKPGVRSCILDAEAV AWDRTTRQIQPFQVLMTRKRKDVDAAAIKVQVCLYAFDLLYLNGEPLVRQPLSARRKLLR ESFEEVEGEFVFATSADTRSAEEVSEFLDKAIKASCEGLMVKTLEVDATYEIAKRSHKWL KLKKDYLDGLGDTLDLVVIGAYLGKGKRAGIYGGFLLACYDEESEEYQSICKIGTGFTEE SLEKHYGFLKEHVLAQPRPYYRWDSGAAPDRWLAAVQVWEVKCGDLSISPVYRAAVGLVD EEKGISLRFPRFLRVREDKKPEEATSSTQVAELYKKQQQIQNQQQAEKGEDEEFY NT seq 2328 nt NT seq  +upstreamnt  +downstreamnt atggcggcgccgccccggctcccgcccagcagcaggggcagggccccccccgcgccccct ccccctcctcggagccgtcggcggagcccccccgggaccccccccgggaccccccccagg agccggcatcgctggaaggaggggaccccgatgggcgggggccgccctcctccgggaccc cggtcggagaccccccgggccctgtaccccccccaccccccgactccccccggtgccccc cccaccccgggggtcccgggggatgaggtcgggcccccccccgccaagcgctgccgccag gctcccagtgaccaggaccggggacctctggccgccagcagccccccgccgctggacccg tcccagtacgaccccgccaggagtgggtaccacccgctgcaggacgcctgctgggggcat gggcaaagtgtcccctacctggcggtggctcgcaccttcgagcgcattgaggaagcctca gcccggctgaagatcatcgagaccctcagcaatttcctgcgctcggtgctggccctgtcc ccgggggagctcctgccctgcctgcgcctctgcctcaaccgcccgggggccccctccgag gggctggagctgggcatcggcgagagcctcctgacccgtgccctcgcccaggccaccggc cggcagctggcgcagatccgcagcgaggcgcaggacaagggggacctggggctggtggcg gagagcagccgctgcacccagcgcaccgtggtggctcccgccccgctcagtgctgctgga gtgctgggcaagctgcgggagatggccaccatgtcgggcaacgcctcggccaacaagaag atcggcatcatcaaggggctcttcgtcgcctgccggcactcggaggcgcgctacctcgtc cggtcactcagcgggaagctgcgcatcgggctggccgagcagtcggtgctcaccgccctg gcgcacgccgtggcgctcacccccccggggcaagggtggccgccagctgtgctggatgcc gggcagggcatggcccccgaggcacgcagggcatggctggaggagcagagccgaatcctc aagcagaccttctgcgagctgcctgactacgctgccatcgtcccggtgctgctggagcac gggctggagaagctgccccagcactgcggcatcaccccaggtgtccccctgaagcccatg ctggcccagcctgcccgtggcgtaggggagctgctgaagcgcttcgaggaggcagcgttc acctgcgagtataaatatgatggcgagcgagcccagatccacgtcctggagagtggggcc gtcttcatctacagccgcaaccaggagaacaccaccgccaagtaccccgacctcgtggac cgcatccccaaggtgctgaagcctggcgtgcgctcctgcatcctggatgcggaggccgtg gcgtgggatcggaccacaaggcagatccagcccttccaggtgctgatgacgaggaagagg aaggacgtggatgccgctgccatcaaggtgcaggtctgcctctacgccttcgacctgctc tacctcaacggggagcccctggtgcggcagcccctgtctgcgcggcgcaagctcctgcgg gagtccttcgaggaggtggagggcgagttcgtcttcgccacctccgccgacacccgcagc gccgaggaggtctcggagttcctcgacaaggccatcaaggcctcctgcgagggcctcatg gtgaagaccctggaggtggacgccacctacgagatcgccaagcggtcgcacaagtggttg aagctgaagaaggactacctggacgggcttggggacacgctggacctggtggtcatcggc gcctacctgggcaagggcaagcgtgcaggcatctacgggggcttcctgctggcctgctac gacgaggagagcgaggagtaccagagcatctgcaagatcggcaccggtttcacggaggag agcctggagaagcactacggcttcctcaaggagcacgtcctggcccagccacgtccctat taccgctgggacagcggggcagcccccgaccgctggctggcagcagtgcaggtctgggag gtgaagtgcggggacctctccatctcccccgtctatagggcagccgtggggctggtggac gaggagaagggcatctcgctgcgcttcccccggttccttcgcgtgagggaggacaagaag cccgaggaggccaccagcagcacccaggtggctgagctgtacaagaagcagcagcagatc cagaaccagcagcaggcagagaaaggggaggacgaggagttttactga

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