KEGG   Anas platyrhynchos (mallard): 101796985
Entry
101796985         CDS       T02816                                 
Symbol
VPS41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
apla  Anas platyrhynchos (mallard)
Pathway
apla04140  Autophagy - animal
apla04142  Lysosome biogenesis
apla04148  Efferocytosis
apla05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:apla00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    101796985 (VPS41)
   04140 Autophagy - animal
    101796985 (VPS41)
   04148 Efferocytosis
    101796985 (VPS41)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    101796985 (VPS41)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:apla04131]
    101796985 (VPS41)
Membrane trafficking [BR:apla04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    101796985 (VPS41)
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 zf-RING_Vps41 Clathrin VPS18_solenoid_2nd zf_RING_Vps8_fungal WD40_CDC20-Fz WD40_Prp19 Beta-prop_EML_2 Vps39_1 Beta-prop_HPS5 zf_RING_Vps8 ANAPC4_WD40 Beta-prop_THOC3 TPR_PEP5_VPS11 TPR_YpiA WD40_WDHD1_1st zf-RING_5 Beta-prop_WDR3_2nd Beta-prop_IFT122_1st Beta-prop_RIG_2nd TPR_INTS8 Beta-prop_IFT140_2nd RING_Ste5 TPR_GEMI5 CFAP251_N zf-RING_11 zf-rbx1 zf-RING_2
Other DBs
NCBI-GeneID: 101796985
NCBI-ProteinID: XP_027307169
Ensembl: ENSAPLG00000005152
LinkDB
Position
2:complement(103762345..103869469)
AA seq 861 aa
MTAAGRAMAEAAEKESGYNEESTDESEEDESEEEPKLKYERLSNGVTEILQKDAASCMTV
HEKFLALGTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGL
YSAEEFHETFDCPIKIVAVHPHFVRSHFKQFVTGGKKLLLYERGWMNRWKPSVLHEGEGN
IRNIKWRGHLIAWANNMGVKILDMISKQRITNVPRDDISLRPDMYPCSLCWKDNLTLIIG
WGNSVKICSVKERHASEMRDLPNRYVEIVFQFDTEFYISGLAPLCDQLVILSYVKEISEK
TEVECCARPRLDIVQPLPESCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIISPRD
VVVAKERDQDDHIDWLLEKKKYEEALMAAEISQKTVKKHKILDIGLAYINHLVEKGEYDL
AARKCQKILGKNTELWEFEVYKFKEIGQLKAISRYLPRRDPILKPLIYEMVLHEFLESDY
EGFATLIKEWPGDLYNNTIIVQAVVDHLKKDPQNRTLLRTLAELYTYDQRYGRALEIYLT
LRHKDVFQLIHKHNLFSSIRDKIVLLMDFDSEKAVDMLLDNEDKISIDRVVEELENRPEL
QHVYLHKLFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFV
EETVYLLSRMGNSRSALKMIMEELQDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGL
LNNIGTHVDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLK
KMHRTQMKGVLVDEENICESCLSPILPSDASKSFNVVVFHCRHMFHKECLPVSNTVSSVQ
FCNICSAKHRGPGSTILEMKK
NT seq 2586 nt   +upstreamnt  +downstreamnt
atgacggccgccggccgcgccatggcggaagccgcagagaaggaaagtgggtataatgaa
gaatcaacagatgaatctgaggaagatgagagtgaagaagagcctaagctgaagtatgaa
cggctttctaatggagtgactgaaattctacagaaggatgcagccagctgcatgacggtg
catgaaaagtttttggcactgggaacacattatggcaaagtttatttacttgatgtccag
gggaacatcacacagaagtttgacgttagcccggtgaagataaatcagatcagtctggat
gaaagtggagaacacatgggtgtttgctcagaagatggcaaggtgcaagtgtttggattg
tattcagcggaagagtttcatgaaacgtttgactgtcctattaaaattgttgctgttcat
cctcattttgtaagatctcacttcaagcaatttgtaacaggagggaaaaagttgctgcta
tatgagagaggctggatgaatagatggaagccttcggttttacatgaaggggaaggaaac
ataagaaacataaaatggagaggacatttaattgcttgggccaataatatgggcgtgaag
atacttgacatgatttccaagcaacgaattaccaacgtccctcgagatgacataagcctt
cgccccgatatgtatccctgcagcctttgctggaaggataatttaacgctgattattggc
tggggaaattcagtaaagatttgctcagtaaaggagcggcatgccagtgaaatgcgtgac
cttccaaaccgctacgtggaaatagttttccagtttgatactgagttttatatcagtggg
ctcgcacctctttgtgaccagcttgttatactttcatacgtaaaggagatttcagaaaaa
acggaggtggagtgttgtgcgcggcccaggctggacattgtacagcccctgcctgagtct
tgtgaggagatttcttctgatgcgctaacagtacgaggatttcaggaaaatgaatgtaga
gattatcatttagagtattcggaaggtgaatcacttttttatatcatcagcccaagagac
gtggttgtggctaaagagcgggaccaagatgaccacattgactggcttctggaaaagaag
aaatatgaagaagctttgatggcagctgagatcagtcagaaaaccgtaaaaaagcacaag
attttggacattggcttagcctatataaatcacctagtagagaaaggagagtatgatctg
gctgctcgaaagtgccagaaaattcttggcaaaaacacagaactctgggaatttgaagtt
tacaagtttaaagaaataggtcagcttaaggcaattagtcgttacttgcccagacgggat
ccaattttgaaacctcttatctatgagatggtcctgcatgagtttttggagagtgactat
gaggggtttgcaacactgataaaagagtggcctggagatctctacaacaatacaatcata
gttcaagctgtagtagatcacctgaagaaagatccacagaataggactttgctaagaaca
cttgcagaactgtatacttatgaccagcgctatggcagagccctagaaatttacctaact
ctgaggcacaaagatgtcttccagttgatccacaagcacaatcttttcagttccatcaga
gataaaattgttctgctcatggattttgattcagagaaagcagtagacatgcttttggac
aatgaagataaaatttccatcgacagagttgttgaagagttagaaaacagacctgaacta
cagcatgtgtatttgcacaagcttttcaaaagagatcaccataaaggacaacgatatcat
gagaaacagatcagtctttatgctgaatacgatcgtccaaatttactaccatttctcaga
gacagcacacactgtccactagagaaggctctagagatctgccaacagaggaactttgta
gaagagacagtctatcttctgagtagaatgggcaatagccgcagtgccttgaagatgata
atggaagaactgcaagatgtagataaagctattgaatttgccaaggaacaagatgatgga
gaactttgggaagatctaattttatattctattgacaaaccaccttttattactggtttg
ttgaacaatattggaacacatgttgatcctattcttttgatccaccgcattaaggaaggc
atggagattcctaatttgagagactctctagtgaaaattcttcaggattacaacttgcag
atcttgctgcgggaaggttgcaagaagatacttgttgccgactctctttctttgttgaag
aaaatgcatcgaactcaaatgaagggtgttctagtggatgaagagaatatctgtgagtca
tgcctttctccaatacttccttcagatgcatccaagtccttcaatgtggtagtgttccac
tgcagacacatgtttcacaaagagtgtctcccagtatctaacacagtatcttctgtccag
ttctgcaacatatgcagtgccaaacaccgagggccaggaagtacaatcctggagatgaag
aaatag

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