Anas platyrhynchos (mallard): 101797440
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Entry
101797440 CDS
T02816
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla04382
Cornified envelope formation
apla04510
Focal adhesion
apla04512
ECM-receptor interaction
apla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101797440 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101797440 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101797440 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
101797440 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
apla04147
]
101797440 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
apla00536
]
101797440 (COL4A4)
Exosome [BR:
apla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101797440 (COL4A4)
Glycosaminoglycan binding proteins [BR:
apla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101797440 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101797440
NCBI-ProteinID:
XP_027320498
Ensembl:
ENSAPLG00000013112
LinkDB
All DBs
Position
9:complement(22845840..22916553)
Genome browser
AA seq
1681 aa
AA seq
DB search
MALPKDSFERIKWLIRAAWWLLIVFSAQEIDGGGYAYIDPCGGQDCSVCRCFPEKGSRGQ
PGELGAQGPIGSLGSTGPAGLPGEKGQRGENGQPGPAGEKGDKGPTGVPGFPGLDGVPGL
PGSEGPRGKRGVDGCNGSRGDPGFPGENGYIGPRGPCGNPGQKGEKGNSVFVSHFGKGPP
GERGDPGPPGIPGPRGSRGSTGPPGYPGQPGLPGIPGYPGLPGEQGNPGIGVDGQKGEPG
DVGLPGPPGSPLLVGPPGAQLFKGEKGQKGLPGITGYRGPRGPKGILGRGEKGEKGIAGF
PGLRGSPGSYGPAGFPGIKGETGTAGFPGQPGYPGIKGDPGEKGPPGPPGAVGTPLLPMK
GPQGDPGFPGPAGDMGSVGPSGPAGALGRPGDDGASLPGLPGLSGAPGPQGFHGDPGLPG
TGEPLPGRPGYPGPPGLPGQPGRQGLPGLPSVICTDRGIPGEPGAKGQIGLPGRKGEKGE
KGNQGLCSCSAGPPGPRGIQGPPGTQGRKGQMGYPGRHGEKGDPGLSGAMGSPGLPGTPG
SAGQHGEKGEKGDLGRVRIKGIKGERGPTGVPGFPGQRGNDGRDGDLGLPGEKGAEGDSG
IPVPGDKGIPGVPGLPGVKGPIGLPGLGIPGPPGVRGTPGDFGDTGSVGPPGLKGQKGET
VCIVSPSPGNPGPPGFKGVQGPKGLKGLPGRPGPNGFDGQKGQRGRPGAGIPGPEGFRGK
AGDPGEEGERGSTINGKNGAPGPPGPDGQKGVPGDTTYGPPGIPGNRGLPGPPGAQGARG
DPGIPGLQGQPGTPGFPGAKGFRGPEGDIGAPGCPGFPGPLCDMGLPGPPGLRGVIGLPG
PQGLPGFKGQKGDRGLSGPPGIKGLKGSPGSRGPPGPPGSRGLPGLPGDNGPPGFPGQTG
SKGIQGPQGFLGLPGTQGPMGISGVKGEEGKMGPSGPSGECGDMGMKGERGPPGDSGSIN
IRLEKGQKGEPGFPGENGFRGERGEKGNIGFRGAPGYPGKNGVPGLPGDHGDTGLMGFPG
LRGFPGPKGFKGMTGFQGQPGDQGDVGLPGMPGNPGLTGPKGSKGKRGDPTLLLGIRGQK
GPPGDPGLTGFCGLPGEKGSAGIQGQPGRLGSKGESGYPGIPGFPGAPGPPGLPGEPGEK
GKQGLLGPPGLQGLAGSQGRKGVPGLPGLDGLDGLKGQKGSAGAPGQSETGRPGYSGELG
PKGDRGEPGWPGISIPGAPGERGFPGFPGIRGPVGPAGPMGRSPSSAPPGLPGDQGPPGL
DGIRGQPGNPGPPGETIFVQGDPGDIGIQGAPGISGQRGQQGARGPPGNQGREGPKGPMG
IHGPQGPPGAVGHPGDQGFQGKPGPKGPTGFIGDPGEPGRIDDSCPTIPGPPGEAGQRGD
DGSIGLSGPIGHPGPQGRKGEEGSCGLPGQDGLPGAPGPPGDQGHVGEQGYTGPQGPPGQ
TGIPGPPGPHVRSSSGFLLVLHSQSDREPLCPQGMPKLWTGYSLLYLEGQEKAHNQDLGL
AGSCLPVFNTMPFAYCNINQVCYYASRNDKSYWLSSAAPLPMMPLSEEEIEPYISRCAVC
EAPAQAVAVHSQDQSIPPCPMNWRSLWIGYSFLMHTGSGDQGGGQSLTSPGSCLEDFRSA
PFIECQGQRGTCQFFANEYSFWLTTVMPELQFASAPLSGTLKEGQEQRKKISRCQVCLKH
G
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggcattaccaaaggattcgtttgaacggattaagtggcttatcagagctgcctggtgg
ctgctgattgttttttcagcacaagaaattgatgggggaggatacgcatatattgaccca
tgtgggggacaggattgttcagtttgtcggtgctttccagaaaaaggatcaagaggtcag
cctggtgagttgggagctcaaggtccaattggatccttgggatctacaggaccagccggt
ctgccaggggaaaaaggacagagaggtgagaatgggcagcctgggccagctggagaaaaa
ggtgataagggcccaactggagtcccaggatttcctggtctagatggtgttcctggatta
ccaggaagtgaaggacccaggggcaaacgtggtgtagatggctgcaatggctcaagaggc
gatccaggatttccaggcgaaaatggatatattggacctagaggtccttgtggaaatcca
gggcaaaaaggagaaaaaggaaattcagtgtttgtatcacattttggaaaaggaccccca
ggagagaggggtgatcctggaccccctggcattcctggtcctagagggtcaagaggttca
acaggcccacctggatacccaggccaaccaggcttgcctggtattccaggttaccctggt
ttgccaggtgaacagggaaatccaggtattggagtagatggacaaaagggggagccgggc
gatgttggacttcctggaccacctgggtcaccattgttagttggacctcctggagctcag
ctgtttaaaggagaaaagggccaaaaaggactacccggaataacaggataccgaggacca
cgtggacccaaaggcatacttgggagaggagaaaagggtgaaaaaggcattgctggattc
cccggattgcggggtagtcctggttcttacggacctgcaggctttcctggaataaaggga
gaaacaggaactgctggttttcctgggcaacctggctatccaggcataaagggggatcct
ggagaaaaagggcccccaggtcctcctggagctgttggaactccattgcttcccatgaaa
ggtccacaaggagatcctggatttccaggtcctgctggtgatatggggtcagttgggcca
tctggtcctgcaggcgcactggggagaccaggagatgatggagcaagtctgcctggcctg
ccaggactaagtggggcaccaggacctcaaggttttcatggtgatcctggtttgccagga
acaggtgaaccacttccaggaagacctggatatcctggaccaccaggactaccgggacag
ccaggaaggcaagggttacctggactacctagtgtaatttgtactgacagagggatccct
ggggaacctggagcaaaaggtcagataggccttccaggaagaaaaggtgaaaaaggagaa
aaaggaaaccaaggcctctgctcatgtagtgctggtcctcctggtccccgtggtatacaa
ggacctccgggtactcaaggaaggaaaggacaaatgggttaccctggaagacatggagaa
aagggtgatccaggcttatctggtgcaatgggatcaccagggctccctgggacacctggt
tctgctggacaacatggtgaaaaaggagaaaagggtgacctaggaagagttagaataaaa
ggaataaaaggtgaaagaggtcctactggggttccaggatttccaggccaaagaggtaat
gatggcagagatggggatttaggattgcctggggagaaaggagctgagggtgattctgga
ataccagtgccaggtgataagggaatccctggagtcccaggactccctggagtaaaagga
ccaataggattgccaggtctggggattcctggccctcctggagtcagaggtacccctgga
gactttggtgatactggtagcgttgggccgcctggtctaaagggtcagaaaggtgagact
gtctgtattgtatcaccatcccctggaaacccaggtcccccaggttttaaaggtgttcaa
ggaccaaagggtttaaaaggactgcctggtcgtcctggtccaaatggctttgatgggcaa
aaaggccagcgaggcagaccaggagctggaatccctgggccagaaggcttccgaggcaaa
gctggtgatcctggtgaggaaggtgaaagaggatccaccattaatggtaaaaatggtgct
ccaggtccacctggcccagatggtcagaaaggtgttccaggtgatactacatatggtcct
ccaggaatcccaggcaataggggactgccaggaccacctggtgcacaaggagcaaggggt
gatccaggcattcctgggcttcaagggcagcctggtactccaggatttccaggtgctaaa
ggttttagaggcccagaaggcgatataggagcaccaggctgtccaggcttccctggtcca
ctgtgtgacatgggattaccagggccaccaggactcagaggtgtcataggcctgccaggc
cctcaaggcttaccaggctttaaaggtcagaagggagataggggcctatctgggccacct
ggaatcaaaggtctcaagggctctcctggctcacggggtcccccaggtcctccaggctcc
cgaggacttccaggacttccaggtgataacggaccacctggcttcccaggacaaacagga
agcaaagggatccaaggaccccaaggattcctaggactcccaggaacacaaggcccaatg
ggaatctctggtgttaaaggtgaagaaggaaaaatgggtccatctgggcctagtggagaa
tgtggggatatgggaatgaaaggtgaaagaggacctccaggagacagtggctccattaac
attcggcttgagaaaggacaaaagggagagccaggctttcctggtgagaatggatttaga
ggtgaaagaggtgaaaaaggcaatattggtttcagaggtgccccaggatatccagggaag
aatggtgtcccaggactgccaggtgaccatggtgacactggactgatggggtttccagga
ttacggggtttcccaggaccaaagggcttcaaaggaatgacagggttccaaggacaacca
ggtgaccagggtgatgtcggcttaccaggaatgcctggaaacccaggattgactggccca
aaaggatctaaaggcaagagaggtgacccaactcttctgcttggtatacgtggtcaaaaa
gggcctcctggagacccaggattaacaggattctgtgggttacctggagagaagggttca
gcaggtatccaaggacaacctggaagactaggatccaagggcgagtctggatacccagga
atacctggatttccaggagcaccaggtcctccaggattgccaggagaacctggagaaaaa
gggaaacaaggacttttgggacctccaggattgcaaggattagctggatcgcagggcagg
aaaggtgttcctggactgcctggactggatggcttggatggactaaaaggtcaaaaaggt
tctgcaggagctccaggtcaaagtgaaacagggcgcccaggatactcaggagaacttgga
ccaaaaggtgacagaggtgaacctggatggcccggtatttccattccaggcgcccctgga
gaaaggggatttccaggattcccaggtataagagggcctgttggacctgctggacctatg
ggaagatctcccagtagtgcccctcccggtcttccaggggatcaaggaccacctggttta
gatggcatcagaggtcagcctgggaatcctggtcctcctggagaaaccatctttgtgcaa
ggagatccaggcgacattggtattcaaggggcaccaggcatttctgggcagcgagggcaa
caaggagccagaggtcctccagggaaccaaggaagagaaggcccaaagggtcctatggga
atccatggcccacagggtccacctggtgctgtaggacacccaggagaccaaggttttcaa
gggaaacctggtcctaaaggtcccacaggtttcattggtgaccctggtgaaccaggaaga
atagatgactcatgccctacaattccaggacctcccggggaagcgggacaaagaggagat
gatggctctataggattatcagggccaataggtcatcctggaccccaaggaagaaaaggt
gaagaagggtcctgtggactgccaggtcaagatggtttacctggggcacctggaccacca
ggtgaccaagggcatgtaggagagcaaggatacactggaccgcaaggtccacctggccag
actggtatcccaggaccaccaggccctcatgttagatcttcaagtggattcttgcttgtc
cttcacagtcagtcagacagagaaccactgtgtccacagggaatgccaaagttatggaca
ggctatagcctgctgtacctggaaggacaagaaaaagctcacaatcaagatcttggtcta
gcaggatcttgtcttcctgtatttaatactatgcccttcgcctactgtaacatcaaccaa
gtttgttactatgccagccgaaatgataagtcttactggttgtcaagtgctgctccttta
ccaatgatgccactctctgaagaagaaatagaaccctacataagcaggtgtgctgtgtgt
gaggccccagcccaagcagtagcagttcacagccaagatcagtcaattcctccctgcccc
atgaactggagaagtctttggataggatattcttttttgatgcatactggatctggtgat
cagggtggtggacagtcccttacgtcacctggaagttgcttagaagacttcagatcagca
ccattcattgaatgccagggtcagcggggaacttgtcagttttttgctaatgagtacagt
ttttggctaacaacagtgatgcctgaactgcagtttgcatcagcccccttgtcaggaact
cttaaagagggacaagagcagaggaaaaaaatcagtagatgtcaagtctgcctgaagcat
ggttaa
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