Anas platyrhynchos (mallard): 101797613
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Entry
101797613 CDS
T02816
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-3(IV) chain
KO
K06237
collagen type IV alpha
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla04510
Focal adhesion
apla04512
ECM-receptor interaction
apla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101797613
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101797613
09142 Cell motility
04820 Cytoskeleton in muscle cells
101797613
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
apla04147
]
101797613
00536 Glycosaminoglycan binding proteins [BR:
apla00536
]
101797613
Exosome [BR:
apla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101797613
Glycosaminoglycan binding proteins [BR:
apla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101797613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101797613
NCBI-ProteinID:
XP_027320512
Ensembl:
ENSAPLG00000014524
LinkDB
All DBs
Position
9:22916468..22979588
Genome browser
AA seq
1682 aa
AA seq
DB search
MAAGGCPGRPLPPLPLLLLLLLLPVLLALLRPGRAAAAESCVCKGKSPCFCDGTKGNKGE
KGFPGVPGPPGHRGFPGPEGPPGPQGPKGSPGLTGLVGPKGIRGAPGIPGFSGPPGLPGE
PGAAGPPGRSGVPGCNGTKGDQGFPGPPGRRGAPGIPGVTGIKGEKGSPADGYNQRYDAK
GDPGLPGMPGLQGAQGVQGYPGENGPQGPPGTSGMPGRPGPPGPKGLMGIKVIGTKGRKG
DTGLTGPPGPPGTVIVTLSGPDNMTDLKGEKGEKGSRGLPGPMGFTGPVGDSQSEKGDRG
EPGAQGKPGKEGAPGPPGLPGQKGEQGKPGMAGRQGAKGIKGNTGPPGACGRTEYYEYVV
GDKGDEGPPGPPGPKGQRGMPGPQGPPGGAGRPGVSRPGLRGPPGFPGPKGKKGEKGQTG
LCIVGPPGLPGITGRPGSVGLPGPPGEPGRVIFRTGPPGRPGEPGYAGPPGPPGDVGMKG
DEACVCTDCSYVPGTPGLPGSPGPHGQDGIPGREGIQGPKGAPGPPGAPGFPGAQGPPGF
KGDQGHKGSKGEPGYVYPEGPKGEQGDPGSRGDKGRKGSSGFPGRSGPKGYKGSKGEEGL
PGTKGDRGLPGLPGNPGLPGEMGLPGPPGYGPQGIRGFKGSKGVPGPPGLPGEAGLKGET
SRITPLPALPGPQGPDGLPGPPGVPGRVGTNGQPGDPGHPGPTGDTGFPGLGFPGNPGPK
GDKGLTGGRGSPGCEGKIGEPGRAGNLGQPGEKGDPGMIIHGEPGRLGSPGGRGIPGPKG
DTGFPGLPGLPGRAGRDGDDGLRGDPGSPGVPGDPGFPGKPAECLTGRPGLPGGQGATGP
PGGRGSLGSKGKLGPPGLGIPGIYGKPGEPGLIGLQGNAGLPGFKGQSGRPGIDGVPGPR
GEPGIMGPLGIPGPPGMIGSPGNPGVRGSFGFPGLKGRKGFLGAKGEPGDKGFPGPSETL
VSIGNKGEQGPKGVQGSMGLRGEKGYAGVQGPPGLAGSEGVPGIPGAKGFMGLPGIPGGQ
GFPGAPGDKGNMGIPGSKGQKGSPGFPGASGDPGPTGYGGFPGEKGDPGHPSPGPPGEPG
PKGDSGAPGLLGSKGEKGSQGQPGHRGIPGPQGIRGETGVAGIPGKPGPPGDVGVKGQQG
RPGQQGIIGPPGAVGYPGENGLAGERGNQGRDGMPGPPGVKGEPGAPGRGIPGLRGVPGR
RGIKGDMGLPGFPGPPGVKGRQGDQGPVGPPGLMGLPGFQGATGMAITGPKGNRGLAGAD
GRPGAPGFQGLPGLPTPSMKGNKGARGADGIPGPTGPNGDTGPPGPKGIEGRPGYPGARG
DPGFLGFPGVKGEKGNQGPPGPQGAEGPRGPKGQRGPPGVSGRIFSVPGSKGPPGLPGVP
GTPGDQGIQGIPGLQGPKGVKGLPGSFGRPGQPGLPGPKGDRGFPGERGQPGLIGFPGLQ
GLPGSPGTIITGPTRRGFIFTRHSQTTKTPSCPPGTSQIYVGFSLLFVQGNERAHGQDLG
TAGSCLQRFTTMPFLFCNTNDVCSFASRNDYSYWLSTVTAMPVDMAPISGRALEPHISRC
IVCEGPAMVIAVHSQTTVVPACPEGWISLWKGFSFVMYTSAGSEASGQALASPGSCLEEF
RAIPFIECHGRGTCNYYTNSYSFWLASLNPQRMFRKPLPQTLKAGELENIISRCQVCMKR
PV
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgggggctgtcccggccgcccgctgccgcccctgcccctgctgctgctgctg
ctgctgctgccggtgctgctcgccctgctccggccgggccgcgccgcggcggctgagagc
tgtgtatgcaaaggtaaaagtccttgcttctgtgatggcacgaaaggtaataagggtgaa
aaaggcttccctggtgtcccaggtccacctggtcatagaggctttcccggtccagaaggg
cctccagggccacaggggccaaagggttcaccaggacttacaggcttagttggacccaaa
ggtatacggggagctccaggaatacctggattttcaggtcccccaggtcttccaggtgaa
ccaggagctgctggccctcctggacgctcgggtgttccaggatgcaacggcacaaagggc
gatcaaggttttccaggtcctccaggtagaagaggtgctccaggcattccaggtgtcact
ggcatcaaaggagagaaggggtcccctgcagatggatataaccaaagatacgatgcaaaa
ggtgatcctgggttgccaggaatgcctgggcttcagggtgcacagggtgttcaaggatat
cctggggaaaatgggccacagggccctccaggaacttcaggaatgccagggagaccagga
cctcctggacctaagggtcttatgggaataaaagtaataggaaccaaaggaagaaagggt
gacactggattaactggaccccctggaccaccaggaaccgttattgtgacattaagtggt
ccagacaacatgacggacttgaaaggagagaaaggggaaaaaggatcaagaggacttcca
ggaccaatggggtttacagggccagttggtgattctcaaagtgaaaagggtgaccgagga
gaacccggagcacagggtaaacctggaaaagaaggtgccccaggtccacctggcttaccg
ggacaaaagggtgaacagggcaaaccaggaatggctggcagacaaggagccaaggggata
aaaggcaacactggtccgcctggagcttgtggtcgaacagagtattatgagtatgtagtt
ggtgataagggagatgaaggaccccctggacctccaggaccaaaaggtcaacgtggtatg
cctgggccacagggtcctcctggaggtgctggtagaccaggtgtgtcaagacctggtctg
agaggtcccccgggatttcctggcccaaaaggaaaaaaaggagaaaaaggacaaacaggc
ttgtgcattgtaggccctccaggactacctgggattactggcagacctggttctgttgga
ttaccaggtcctccaggagaaccaggtagagtaatatttagaacaggcccaccaggacgt
cctggagagccagggtatgcaggacctccaggacctccaggagatgttggcatgaaaggt
gatgaagcttgcgtgtgtactgattgtagctatgttccgggaacacctggtcttcctggt
tcgcctgggccacacggccaggatggcatcccaggtagggaaggaatacaaggtcccaaa
ggagctccaggtcctccaggagcaccagggtttccaggagctcaaggacctccaggtttt
aaaggagatcaaggacataaaggatcaaaaggtgagccaggatacgtgtatccagaaggg
ccaaaaggtgagcaaggagatccagggtccaggggagacaaaggaagaaaaggttcaagt
ggatttccgggaagatctggaccaaagggctacaagggttctaaaggtgaagagggattg
cctggtacaaaaggagatagaggactacctggactgcctggtaatcctggtctccctgga
gagatggggcttcctggaccaccaggatatggaccacaaggaataagaggtttcaaaggc
tctaaaggagtacctggtcctcctggattgcctggagaagctggtctgaaaggagagacc
agtaggataactccattgcctgcattgccaggacctcaaggaccagatggtttacctgga
cccccaggggtgcctggaagggtcggaacaaacggtcagccaggtgatccaggacatcca
gggccaacaggtgacacaggctttccagggcttgggtttcctggaaacccaggtccaaaa
ggagataagggacttactggaggcagaggatcaccaggttgtgaaggaaaaattggagag
ccaggacgagctggaaatctgggacaaccaggagaaaagggggacccaggcatgattatt
catggggagccaggcagacttggttcaccaggaggtcgtggcattcctggcccaaaaggt
gatacaggatttccaggacttccaggcctaccaggacgtgctggacgtgatggtgatgat
ggcctaagaggagatcctggctcacctggagttccaggggatccaggttttccagggaaa
cctgctgagtgtcttactggccggccaggtttgccaggtggccagggagctacaggccca
ccaggaggaagaggttcattaggttcaaaaggaaaacttggtcctcctggcttgggtatc
ccaggaatctatggaaaaccaggggaacctggcttaatcggtcttcagggaaacgcagga
ttacctggtttcaagggacagtctggaagaccaggaatcgatggtgtgccaggccctagg
ggagagccaggtataatgggcccattaggaattcctggacccccaggcatgattggaagt
ccaggcaacccaggtgtcaggggttcttttggcttcccagggctaaaaggaagaaagggg
tttcttggagcaaaaggtgaaccaggtgataaaggttttcctggaccttctgagaccttg
gttagcattggaaataaaggagagcaaggcccaaaaggagtccaaggaagcatgggtcta
agaggagaaaaaggatatgcaggtgtacaaggtcccccaggtcttgctggatctgaagga
gtacctggtataccaggtgccaaaggatttatgggtcttccaggtattcctggaggacaa
ggattcccaggtgcaccaggagacaaagggaacatgggaattccaggttcaaaaggacag
aaaggatctccaggctttccaggagcatcaggtgaccctggtccaacaggctatggtggc
tttccaggtgaaaaaggagaccctgggcacccatctcctgggcccccaggagaacctggt
ccaaagggagattcaggtgctcctggacttctgggcagcaaaggagaaaaagggtcccaa
ggtcagccaggacatagaggaataccagggccacaagggatcagaggggaaacaggagtt
gcaggaatcccagggaaacctggacctcctggagatgttggtgttaaaggacagcagggt
cgcccaggacaacagggcattataggccctcctggtgctgttggataccctggagaaaat
ggacttgctggtgaaagaggcaatcagggtcgggatggtatgcctggtcccccaggagta
aagggagaaccaggggcaccagggagaggtatccctggacttcgaggtgttcctggtcgt
agaggaatcaaaggggacatggggctgcctggttttcctgggccaccaggtgtgaaaggt
cgtcagggtgatcaaggacccgttggacctcctggcttaatggggttacctggatttcaa
ggtgcaacaggcatggcaattactggcccaaaaggaaatagaggccttgctggtgcagat
ggaagaccaggtgctcctggttttcaagggttgcctggtcttcccactcccagcatgaaa
ggaaacaaaggtgctagaggggcagatggcataccagggccaacaggtccaaacggcgac
actggacctccaggtccaaaaggaatagaaggtcgaccaggttatcctggtgctagaggg
gaccctggttttcttggatttccaggtgtaaaaggagaaaagggtaatcaaggaccccct
ggaccacaaggtgcagaagggccaaggggaccaaaaggccaacgtggtccacctggagtc
tctgggagaatattctctgtcccaggaagcaaggggcctcctggactgcccggagtccca
ggaacaccaggagatcaaggaattcaagggattcctgggctacaaggacctaaaggagta
aaaggtctaccaggaagctttggtcgtccaggtcaaccaggactgcctggtccaaaagga
gaccggggatttccaggagaaagaggacaacctggactgattggctttcctggtctacag
gggttacctggatcaccaggtactatcatcactggtccaacaagaagaggttttatcttt
acccggcatagtcaaacaacaaagactccttcgtgtccgccagggacatcacagatctat
gttggcttttcgctgctttttgttcaaggaaacgaacgagcgcatggacaagaccttgga
acagctggtagctgcttgcagagatttaccaccatgccattcctattctgtaacaccaat
gatgtttgtagctttgcttctcgcaacgactattcatactggctgtcaactgtgacagca
atgccagtagacatggcaccgatttctggcagagcactagagccgcatataagcagatgc
attgtctgtgaaggacctgcaatggtaatagcagttcacagccaaacaactgtagttcct
gcatgtccagaaggctggatatctctctggaagggtttttcttttgttatgtatacgagt
gctggctcagaagcttctggccaagcgctggcatctcctggatcttgcttggaagaattt
cgagccatcccgttcatagagtgccatggcaggggcacatgcaactactacacgaactcc
tacagcttctggttggcatcactaaatccacaaagaatgttcaggaaacctctgccacag
acattgaaagcaggagaactagagaacatcatcagtcgttgtcaggtctgcatgaagaga
ccagtgtaa
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