Anas platyrhynchos (mallard): 101798080
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Entry
101798080 CDS
T02816
Symbol
NDC1
Name
(RefSeq) nucleoporin NDC1
KO
K14315
nucleoporin NDC1
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101798080 (NDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apla03019
]
101798080 (NDC1)
Messenger RNA biogenesis [BR:
apla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
101798080 (NDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
GP41
Motif
Other DBs
NCBI-GeneID:
101798080
NCBI-ProteinID:
XP_027318671
Ensembl:
ENSAPLG00000002028
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All DBs
Position
8:complement(26875609..26893555)
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AA seq
742 aa
AA seq
DB search
MTGSAQCTAGPCSPPRPLSPLPPGRAPPLAAAFPLISRRAPRRKPPQRSAEGGGGRFERR
RGRPGPAMEAAAAASCRQRALLRQVLGWRLAAAVAWSVLLLPACTAAFVLLGRAQPLRPL
RWIADSFNDLYTSYVIFCILLMSVVILVISIFNVEFYAVVPSIPCSRLALIGKIIHPQQV
IHSAVHAVMGMLVAWCAAVMTKGKFQFLAVPCTPSESPENAVPQMCLNEYHLFFLLSGAF
IGYSYSLLYLINNMNYLPFPIIQQYKYLRFRRSLPLLVKHSCAESLYLVRNFCVAYYFFG
YIPKVWISTTMDLHIDSKLHPLDTLSGLLDLSLFYHTWLCGAFLLITWYIAWLLFKIYAT
ETHHFPVQPTFAEETDQCLPKILNSNPPLIIKFLALQDLMLLSQYSPVRRQEVFSLSQPG
GHPHNWTAISRECLSLLTDLTQRLIAQQEAAAANGRAKQQAGEMKVLPQTPGAAVTEDMP
FQSQRSNVIHRASMASLVKSPLMPSKTSPGSDIGSPFSSPALTSKVGILDLNSPWHGSVQ
SPHVMRRGPKLWTSGSGLQMNGSHHESFPVVSLARVGSEAVQPSFIYTWLQNKQEQIKNF
LSRRALIMYFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDQFGVVQTTLPAIL
NTLLTLQEVVDRHFKLPHVSSKPPRISGSLVDTSYKTLRFALRASLKTALYRITTVFGEH
LNAVQVSPEHKKRLQQFLEYKE
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgacggggagcgcgcagtgcactgccgggccttgtagtcctccccgccccctctccccc
cttccccctgggcgcgctccccccctagcggccgccttcccgctcatttcccggcgtgcc
ccgcgccggaagccgcctcagcgctcagcggaagggggcggcggccgcttcgaacggcgg
cgcgggcggccgggcccggccatggaggcggcggcggcggcctcgtgccggcagcgggcg
ctgctccgccaggtgctgggctggaggctggcggccgccgtcgcctggtccgtgctgctg
ctgcccgcctgcaccgccgccttcgtgctgctcggccgagcgcagccgctccgcccgctg
cgctggatcgccgattccttcaatgatttgtatacttcctacgtcatcttttgtatcctc
cttatgtctgtggtgatactggtaataagcatcttcaacgttgaattctatgcagttgtg
ccatcgataccgtgctctcgattagcgctgataggaaaaattattcatcctcagcaagtt
atccattcagctgttcatgctgtaatgggaatgctggttgcttggtgcgctgcagttatg
acaaaagggaagttccagtttcttgctgtgccctgcacgccttcagaaagcccagaaaat
gctgttcctcagatgtgcttaaatgagtatcacctcttttttctgctttctggagctttc
attggatacagttacagcctcttgtatcttattaacaatatgaattatttgccatttcca
attatacagcaatacaagtacttacgtttcagaagatctttgcctctcctcgttaaacac
agttgtgcggaatcgctgtatttggtcagaaacttctgtgtcgcatattacttttttggt
tatatcccaaaagtatggataagtaccacaatggatcttcacatagacagtaaattgcat
ccccttgacactctgagtggcttactggacctctctttgttctaccatacctggctatgt
ggtgcatttcttctgattacctggtacattgcctggttgctcttcaagatctatgctaca
gagacacatcattttcctgttcagccaacttttgctgaggagacagaccagtgcctgcct
aaaatcttaaacagcaaccctcccctgattataaagttcttagccttacaagacttgatg
ttgctttcccagtattcccctgttcgacggcaggaagtctttagccttagtcagccaggt
gggcaccctcacaactggactgcaatatcaagggagtgtttgagtcttctaactgatctg
acccagcggctgatcgcacagcaggaagctgcagcagcaaatgggagagcaaaacagcaa
gcaggagagatgaaagtacttccacagactccaggagctgcggtgacagaagacatgcca
ttccagtcacagagatctaacgtcattcacagagcctccatggcatccctggttaaatcg
cctctaatgccttcaaagacatcacctgggtctgatattggctcaccttttagttcacct
gctttaacctccaaggtgggaattctggatttaaactcgccttggcacggatcagtccaa
agtcctcatgttatgagaaggggaccaaagctgtggacatcaggatcaggtctgcaaatg
aatggttcccaccacgaatccttcccagtggtctctcttgcaagagttggcagtgaggca
gtacagcccagctttatttacacatggcttcagaacaagcaagaacagataaaaaacttc
ttgtcaagacgagcgctgataatgtatttcttcagcaagcatccagaggcttccatccaa
gctgttttctccgatgcccaaatgcacatctgggcattggaaggtctgtctcatctggta
gcagcttcctttacagaagaccagtttggagttgttcaaactacactgccagctatcctg
aatactctactgacgcttcaggaggttgtagacagacacttcaaactgcctcatgtttcc
agcaaacctcccaggatctcgggaagtctggtggacacatcttacaaaacgctaagattt
gcacttagagcatctctgaaaacagcactgtaccggataactactgtctttggagaacac
ttaaatgcagtgcaagtgtctccagaacataagaaaagacttcagcagttcttggaatac
aaagaataa
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