Anas platyrhynchos (mallard): 101798229
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Entry
101798229 CDS
T02816
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla03013
Nucleocytoplasmic transport
apla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101798229 (UPF2)
03015 mRNA surveillance pathway
101798229 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apla03019
]
101798229 (UPF2)
Messenger RNA biogenesis [BR:
apla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101798229 (UPF2)
mRNA cycle factors
P-body specific factors
101798229 (UPF2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
101798229
NCBI-ProteinID:
XP_005009709
Ensembl:
ENSAPLG00000010287
LinkDB
All DBs
Position
1
Genome browser
AA seq
1301 aa
AA seq
DB search
MFVVCPVNTMPAERKKSASMDEKESSLNNKEKEFGERRPVSTREKPKEDVKVGVKRETLK
VPEDKKKKLEEDKRKKEDKERKKKDDDKVKAEEEQKKKEEEEKKKLEEEEKKKQEEEVKR
QQEEAAAQLKEKEEAHQLHQEAWERHQARKELRSKNQNAPDNRPEENFFSRLDSSLKKNT
AFVKKLKTITEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQR
YADFAPSLLQAWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLK
NIINADRESHTHVSVVISFCRHCGDDIAGLVPRKVKTVAEKFNLSFPPSEIISPEKQQPF
QNLLKEYFTSLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLAN
SQSLADILDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLI
DLKAFVPAILFKDNEKCSQSKDSSKDESRDSKDAKDNKDAPGSEDLELELENLDINDDPL
ELDCGEEAEDLTKKLLDEQGKREGADSTGADSSDGKQAERKQEDEEASTGSHLKLIVDAF
LQQLPNCVNRDLIDKAAMDFCMNMNTKANRRKLVRALFIVPRQRLDLLPFYARLVATLHP
CMSDVAEDLCSMLKGDFRFHVRKKDQINIETKNKTVRFIGELSKFKMFSKNDTLHCLKML
LSDFSHHHIEMACTLLETCGRFLFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENA
YYYCNPPPAEKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDAEVKDYVIC
CMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISS
AKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSPLDPPEHLFRIRLVCTILDTCGQ
YFDRGSSKRKLDCFLVYFQRYVWWKKSLDVWTKDHPFPIDIDYMISDTLELLRPKIKLCS
SLEEAIRQVQDLEREFLIKLGLVNDKDSKDSITEGENLEEDEEEEEGGAETEEQSGNESE
VNEPEEEEGSDNEEEEGEEEEEENTDYLTDSNKENETDEENTEVMIKGGGLKHVPCAEDE
DFIQALDKMMLENLQQRSGESVKVHQLDVAIPLHLKSQLKKGPPLGSGEGESESGDTMPF
VMLTRKGNKQQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEM
LQSLAQRPAPANTNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtggtttgcccggttaacacaatgccagctgagcgcaaaaagtcagcaagcatg
gatgaaaaagaatcttcgttaaataataaagaaaaagaatttggtgaaaggcgaccagtg
agcaccagggagaagccaaaagaagatgtcaaggttggggtgaagagagagactttaaag
gttcccgaagataaaaagaaaaaactggaagaggataaaagaaaaaaagaagacaaggag
cgaaagaagaaagatgatgataaagtgaaggcagaagaagagcaaaagaagaaagaagag
gaggaaaaaaagaaacttgaagaggaagagaaaaagaagcaagaggaggaagtgaaacgt
cagcaagaagaagcagctgctcagctgaaagaaaaagaggaagcacatcagctccatcag
gaggcttgggagcgccatcaggcaagaaaagagcttcgcagcaaaaaccagaatgcacca
gacaatcgccccgaggaaaacttcttcagcagactagactccagtctgaagaagaacaca
gcttttgttaagaagctaaaaaccattacagagcaacaaagggactccttgtcccatgat
tttaatagcctgaatttaagcaaatacattgcagaagcagtagcttctattgtggaagcc
aaactgaaaatctcggatgtgaactgcgctgtgcacttgtgttccctctttcaccagcgc
tatgctgattttgctccctcgttacttcaggcttggaaaaaacattttgaagcaaggaaa
gaagagaagactcccaacattactaagttgagaactgatttgcgtttcattgcagagtta
acaatagttgggattttcactgacaaggaaggtttgtctttaatctatgagcagcttaaa
aatattattaacgctgaccgagagtcccacactcatgtttctgtggttatcagcttttgt
cggcactgtggagatgacattgctggtttggtaccaaggaaagtaaaaactgttgcagag
aagtttaacttgagctttcctcctagtgagataattagcccagagaaacaacagcccttc
cagaatttgttgaaggaatactttacgtctttgaccaaacatctgaaaagggaccacagg
gagctacaaaatattgaaagacaaaacaggcgcatcctgcactccaaaggagaactgagt
gaagatcggcacaagcagtatgaggaatttgctatgtcatatcagaaactgttggccaat
tctcagtctctagctgatattctggatgagaatatgcctgaccttccccaagacaaacca
actcctgaggaacatggacccggtattgacattttcacaccaggaaagcctggagaatat
gacctggaagggggtatttgggaagatgaagatgctagaaacttctacgagaacctcatc
gacttgaaggcttttgtgcctgcaatcttgtttaaagataatgaaaaatgttcccagagc
aaggattccagcaaggacgaatcaagagattccaaagatgccaaagataataaggatgca
cctgggagtgaggatttggaattggagctggagaatttggatattaatgatgatcccctg
gaattagactgtggagaagaggcagaagatcttacaaaaaagcttcttgatgaacaaggc
aagagagagggagcagatagcaccggagctgacagtagtgacggaaaacaagctgaaaga
aaacaagaagatgaagaagccagcactggatctcacttaaaacttatagtagatgctttt
cttcagcagcttccgaactgtgtcaacagagacctcatagacaaggcagccatggatttc
tgcatgaatatgaatacaaaagcaaaccgaagaaaactagtgcgagcccttttcatagtt
cctaggcaaaggttggatttgctaccattctatgcaaggctggttgccacgttgcatccc
tgtatgtctgatgtagcagaggatctttgttccatgctgaagggggatttcagatttcat
gtaagaaaaaaggaccagatcaacattgaaacaaagaataaaactgtgagattcattggt
gagcttagcaagtttaagatgttctccaaaaatgatactctccactgcttaaagatgctt
ctgtcagacttctctcatcaccacattgaaatggcatgtactctgttggaaacctgtgga
agattcctcttcagatcaccagaatctcacttgagaaccagcgttcttttggaacaaatg
atgagaaagaaacaagcaatgcatcttgacgcccgctatgttacaatggtggaaaatgcc
tactactactgtaatccccctccagctgaaaaaactgtgaagaaaaaacgtcctcccttg
caggaatatattcgtaagcttctctacaaggatctctcaaaggtcaccacagagaaggtc
ctgagacagatgcgcaagctgccttggcaggatgcagaagtaaaagattacgttatatgc
tgcatgatcaacatctggaatgtgaaatataatagtattcactgtgtagccaacctccta
gcagggttggtcctttaccaggaagatgttggaattcatgttgtggatggagtactagag
gatattcgactaggaatggaggttaatcagccaaagtttaaccagcggcggatcagcagt
gccaagtttttgggggagctttacaattatcgaatggtggaatcggctgtaatatttcga
actctatattcattcacatcgtttggtgtgaaccctgatggtagtcctagtccactggat
cccccagagcatcttttcagaatcagactagtctgtacgatccttgatacctgcgggcaa
tattttgacagaggatccagcaaacgaaaacttgattgcttccttgtgtacttccagcgc
tatgtttggtggaaaaaaagtctggatgtctggacaaaagaccacccgtttcctatagac
attgactatatgatcagtgatacactggaactcctgagaccaaagataaagctctgcagt
tctctggaagaagctatcagacaggttcaagacttggaaagagaattcttaataaaatta
gggcttgtgaatgacaaagattccaaagattccattacagaaggagagaatctggaagag
gatgaagaagaagaagaaggtggagcagagacagaggaacaatctggaaatgaaagtgaa
gtaaacgagccagaagaagaggagggttctgacaatgaggaagaagaaggtgaagaagag
gaggaagaaaacactgattatcttacagactccaataaggaaaatgaaactgatgaggag
aatacagaagtaatgattaaaggaggaggacttaaacatgttccatgtgcagaagatgag
gacttcattcaggcattggataaaatgatgctggaaaatcttcagcaacggagtggcgaa
tcagttaaagtacatcagttggatgtggccattcccctacacctcaaaagtcagctgaag
aagggtcccccacttggaagtggagaaggggagtcagagtctggagacacaatgccgttt
gtcatgttaacacgaaaaggcaacaaacagcagtttaagatcttaaatgtgccgatgtct
tcccaacttgctgcaaaccactggaaccaacagcaggctgaacaggaggagagaatgcgg
atgaaaaagctcactttggatatcaacgaacggcaagaacaagaggactaccaggaaatg
ttgcagtctctggcacagcgtccagctccagcaaatacaaatcgtgaacggcgtcctcgt
taccagcatccgaagggagcacctaatgcagatctaatctttaaaactggtgggaggaga
cgttga
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integrated database retrieval system
