KEGG   Anas platyrhynchos (mallard): 101798395
Entry
101798395         CDS       T02816                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
apla  Anas platyrhynchos (mallard)
Pathway
apla03030  DNA replication
apla03410  Base excision repair
apla03420  Nucleotide excision repair
apla03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:apla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    101798395 (RFC4)
   03410 Base excision repair
    101798395 (RFC4)
   03420 Nucleotide excision repair
    101798395 (RFC4)
   03430 Mismatch repair
    101798395 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:apla03032]
    101798395 (RFC4)
   03036 Chromosome and associated proteins [BR:apla03036]
    101798395 (RFC4)
   03400 DNA repair and recombination proteins [BR:apla03400]
    101798395 (RFC4)
DNA replication proteins [BR:apla03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    101798395 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    101798395 (RFC4)
Chromosome and associated proteins [BR:apla03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    101798395 (RFC4)
DNA repair and recombination proteins [BR:apla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     101798395 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    101798395 (RFC4)
SSDB
Motif
Pfam: AAA Rep_fac_C RCF1-5-like_lid DNA_pol3_delta2 AAA_assoc_2 Rad17 AAA_16 AAA_30 AAA_22 AAA_11 DUF815 AAA_24 Mg_chelatase AAA_14 SLFN-g3_helicase RuvB_N AAA_19 AAA_28 TIP49_C AAA_5 DNAX_ATPase_lid Nsp2_AV AAA_7 DNA_pol3_gamma3 ResIII bpMoxR AAA_3
Other DBs
NCBI-GeneID: 101798395
NCBI-ProteinID: XP_027320161
Ensembl: ENSAPLG00000007380
LinkDB
Position
9:8916080..8927364
AA seq 327 aa
MQAFLKGPAAISTKPPAARDRGAAGSSGEGKKPRPVPWVEKYRPKNVDEVAFQDEVVAVL
KKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELFRQRVLELNASDERGIQVIREK
VKAFAQLTASGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY
ISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKENVKISSEAVSYLVKVSEGDLRKAI
TFLQSATRLMGGKEITENIVTEIAGVIPKETMDGLLSACQSGSFERLETVAKNLINEGYA
VSQLVNQLHDIVVESDDFSDKQKVYHS
NT seq 984 nt   +upstreamnt  +downstreamnt
atgcaggccttcctgaagggccccgccgccatcagcaccaagccaccggccgccagggac
aggggcgcggcggggagcagcggcgagggcaaaaagccccggcccgtgccctgggtggag
aaatatcgccccaagaacgtggatgaagtcgccttccaggatgaagtggtcgctgtgctc
aaaaagtccttggaaggcgccgatcttcccaatctgttgttctatggcccacctggaact
ggaaagacttccactattttagcagctgccagagaactctatggtcctgaattattccga
caaagagtccttgagttaaatgcctccgatgagcgtggaatacaagtgatccgggaaaaa
gtgaaggcttttgctcagctaacagcatctggaagtcgttcagatggcaagccttgtcct
ccttttaagattgtaatcctggatgaagcagattctatgacttcagcagcccaggcagcc
ttaagacgcacaatggaaaaagaatctaaaacaacacgtttctgccttatttgtaactac
atcagcagaataattgaacctttaacgtctcgatgctccaaattccgcttcaaacctttg
tcagacaaaatccagcagcagaggctattggacgtttctgagaaggaaaatgtgaaaatc
agtagtgaggcagtctcttaccttgttaaagtgtcagaaggggacttaagaaaagccatt
acttttcttcaaagtgccactcgcttaatgggagggaaggagatcacagagaatatagtc
actgaaattgctggggtcatccctaaagaaacaatggatggactgctgtctgcctgccag
agtggttcatttgagagactggaaacagtggcaaagaacctcataaatgaagggtatgct
gtcagtcagcttgtaaaccagcttcatgatattgttgtggagagtgacgatttcagtgac
aagcagaaagtctatcatagttga

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