Anas platyrhynchos (mallard): 101798399
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Entry
101798399 CDS
T02816
Symbol
CNOT6
Name
(RefSeq) CCR4-NOT transcription complex subunit 6 isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101798399 (CNOT6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apla03019
]
101798399 (CNOT6)
Enzymes [BR:
apla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101798399 (CNOT6)
Messenger RNA biogenesis [BR:
apla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101798399 (CNOT6)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101798399 (CNOT6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_1
Motif
Other DBs
NCBI-GeneID:
101798399
NCBI-ProteinID:
XP_012960795
Ensembl:
ENSAPLG00000012715
EnsemblRapid:
ENSAPLG00030003801
UniProt:
R0L9D1
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All DBs
Position
14:5077627..5109772
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AA seq
557 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSSEEAANGKKSHWAELEISGKVRSLSSSLWTLTHLTALHLSD
NSLSRIPSDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELHLNNNLLRVLPFELGKLF
QLQTLGLKGNPLTQDILNLYQEPDGTRRLLNYLLDNLAGTAKRISTEQPPPRSWIMLQEP
DRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKAIMQEILSCNADIISLQE
VETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGMEKQLVLVANA
HMHWDPDYSDVKLVQTMMFLSEVKNIIDKASRTLKPGVSGEHGTIPLVLCADLNSLPDSG
VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGTTNGRITHGFKLKSAYENGLMPYT
NYTFDFKGIIDYIFYSKPQLNILGILGPLDHHWLIENNISGCPHPLIPSDHFSLFAQLEL
LLPFLPPVNGIHLPGRR
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaagtacgatccacctgatccacggaggatgtacacaattatgtcctca
gaggaagcagccaacggaaagaaatcacactgggcggagttggaaataagtgggaaagtg
agaagcttaagttcatcgttgtggacactgacccatttgacagctttgcatctcagtgac
aattccttatcccgtattccttcagacattgccaagcttcacaatctggtgtatctggac
ctgtcctctaacaaaatccgcagtttaccagcagagctcggaaacatggtgtcactcagg
gaactacatttaaataacaacctgttacgagttttaccttttgagctgggaaaactgttc
cagttacagactttgggtctgaaaggaaatccacttacacaggatattctgaacctttat
caggaaccagatgggacacgaaggctactgaactatttgcttgataatttggcaggtact
gcaaaaagaatttcaacagaacaaccgcctccaagatcttggattatgttgcaagaacca
gaccgtacaagaccaacagccttgttctctgtcatgtgttacaacgtactttgtgacaaa
tatgctacccggcagttgtatggctattgtccatcttgggcactgaactgggaatacaga
aaaaaagccattatgcaggaaatcctgagctgtaatgccgacatcataagtcttcaggag
gttgaaactgaacagtactacagttttttcctggtagaattgaaagaacgtggctataat
ggattcttcagtccaaaatccagagctaggacaatgtcagaacaggaaagaaaacatgtt
gatggttgtgcaatatttttcaaaacagaaaaatttactttggttcaaaaacataccgtt
gagttcaatcaactagctatggcaaactcagaaggttcagaagctatgttgaacagagtt
atgacaaaagataacattggagttgctgtattattagaactgcgaaaagaattgatagaa
atgtcatctggaaaaccacaccttgggatggaaaagcagctagttcttgttgctaatgca
catatgcattgggacccagattattctgacgtgaagctagttcagactatgatgttcctg
tctgaggtaaagaacattattgataaagcttcccgtactctcaagcctggtgtttcggga
gaacatggaaccattccacttgtactgtgtgccgatctgaattctctgccagactctggt
gttgttgagtatttgagtactggtggagtggaaacaaaccacaaagatttcaaggaactg
agatacaatgaaagtcttactaacttcagctgtaatggaaaaaatggaacaacaaacgga
agaattacacatggtttcaagttgaagagtgcctatgagaatggtctaatgccttataca
aattacacatttgatttcaagggtattattgactacatcttctattctaaacctcagcta
aacatacttggcattcttggacctttggatcatcattggttaatagagaacaatataagt
ggttgtccgcatccgctcatcccttctgaccacttctcactttttgcacaactggagctt
ttgctgcctttcctgcctcctgtaaatggaatccatctccctggcaggaggtag
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