Anas platyrhynchos (mallard): 101799393
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Entry
101799393 CDS
T02816
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
101799393 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
apla00536
]
101799393 (COL11A1)
Glycosaminoglycan binding proteins [BR:
apla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101799393 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
DUF4763
Motif
Other DBs
NCBI-GeneID:
101799393
NCBI-ProteinID:
XP_038038615
Ensembl:
ENSAPLG00000012650
LinkDB
All DBs
Position
8:complement(3844887..3987230)
Genome browser
AA seq
1858 aa
AA seq
DB search
MEVQRWSTRWKTKRWPWDSAVTVLVAFAALLGAAEVRGAEPVDVLKALEFHNMPEGVSRT
TGFCTNRRDSKGSDVAYRVSKTAQLSAPTKQLYPGGDFPEDFSILMTVKPKKGIQSFLLS
VYNEQGIQQVGVEVGRSPVFLFEDQNGKPAPEDYPLFRTVNIADGKWHRVAISVEKKSVT
MIIDCNKKTTKPLERSDKTIVDTNGITVFGTRILDEEVFEGEIQQLLIIADPRAAYDYCE
HYSPDCDSPVPNAAQAQDPQVDEYTPEDFIEYDYEYGDADYKETDSVTEGPPLFEETVAQ
TEKKKATVKKKKRTVAASSKDKPQKATTKKSENYATKKKKSYQAATKDKLGVKANIVDEF
QEYSITENDYGSQTEAPYKTTEANEQNPVEEVFAEEYVTGEDYDKKAGETEYGSRGVDLS
ESDLLVDGDLGEYDFYEYKEYEEKPTDSTNEEFGPGVPAETDITETSVTGHGAYGEKGQK
GEPAVIEPGMLIEGPPGPRGPAGLTGPPGLQGPVGPPGDPGERGPPGRPGLPGADGLAGP
PGTMLMLPFRFGGDGEKGPTISAQEAQAQAILQQARIAMRGPPGPMGLTGRPGPVGGPGA
AGAKGESGEPGPQGPRGVQGAPGPSGKAGKRGRPGADGARGMPGEPGAKGDRGFDGLPGL
PGDKGNRGDRGPQGPPGLPGEDGSRGEDGEVGPRGLPGEAGPRGLLGPRGTPGPPGQPGI
AGVDGPSGPKGNMGPQGEPGPPGQQGIPGPQGLPGPQGPIGPPGEKGPQGKPGLPGLPGS
DGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGF
KGDMGLKGDRGEVGQPGPRGEDGPEGPKGRAGPSGDPGAAGPAGEKGKLGVPGLPGYPGR
QGPKGSTGFPGFPGANGEKGARGLHGKPGPRGQRGPTGPRGSRGPRGPTGKPGPKGTAGN
DGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGV
VGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGIPGKDGPAGLRGF
PGERGLPGAQGPAGLKGGEGPQGPPGPVGSPGERGAAGTAGPIGLPGRPGPQGPPGPAGE
KGAPGEKGPQGPAGRDGVQGPVGLPGPAGPSGSPGEDGDKGEIGEPGQKGSKGDKGENGP
PGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGPRGFPGPPGPIGLQGLPGPPGE
KGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGEAGNPGPPGE
SGTSGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQ
DGVGGEKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGATGAEGRQGEKGAKGEPGAEGA
PGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGPLGPPGLPGLKGDPGS
KGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGAKGDAGISGPAGPLGPPGPPGLPGP
QGPKGSKGSSGPAGQKGDSGLPGPPGPPGPPGEVIQPLPIQSPKKTRRSPDYMVSDAGDN
ILDYSDGMEEIFGSLNSLKQDIEHMKYPMGTQNNPARTCKDLQLCHPDFPDGEYWIDPNQ
GCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKENPGSWFSEFKRGKLLSYLDVEG
NSINMVQMTFLKLLSASARQNFTYNCHQSVAWHDASSDSYDKALRFLGSNDEEMSYDNNP
YIKALHDGCASRKGYGKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVGPVCFLG
NT seq
5577 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgcagagatggtccacgcgatggaaaacgaaaaggtggccctgggactcggcg
gtgaccgtgctcgtcgccttcgccgccctcctcggggctgcagaggtcagaggagctgaa
ccagttgatgtactgaaagcattagaatttcacaatatgccagaaggagtatcaagaaca
acaggattttgcacaaacagaagggattcaaaaggatcagatgttgcctacagagtttca
aaaactgcacagctcagtgccccaacaaagcagctgtacccaggtggagattttccagaa
gatttttcaatattaatgacagtaaaacctaaaaagggtatccagtccttccttctgtct
gtctacaatgaacaaggaattcagcaagtaggtgttgaagttggtagatcccctgtcttc
ctctttgaagaccaaaatggaaaacctgccccagaagactatcctcttttcagaacagtc
aacattgctgatggcaagtggcatcgagtagccattagcgtggagaagaaaagtgttaca
atgatcattgactgtaacaaaaaaactacaaaacctctggaaagaagtgacaaaaccatt
gtggacaccaatggcattactgtctttggaaccaggattctggacgaagaagtttttgag
ggtgagatccagcagctgttgattatagctgaccccagagctgcatatgactattgtgag
cattatagcccagactgtgattccccggtgcccaatgctgctcaggctcaagatcctcaa
gttgatgagtacacgccagaagattttatcgaatatgactatgagtatggggatgcagat
tataaagaaactgactctgtaacagagggacccccactttttgaagagacagtagcacaa
acagagaaaaagaaagccacggtcaaaaagaagaagaggacagtggccgctagctcaaag
gacaaaccccaaaaggccacaacaaaaaaatctgaaaactatgcaaccaagaagaagaaa
agttatcaagcagcaacaaaagacaaactaggggtaaaggcaaacattgttgatgaattt
caagagtatagcataaccgaaaatgactacgggtctcagacagaagctccctacaaaact
acggaagcaaatgagcaaaatcctgttgaagaagtatttgctgaagaatacgtaactgga
gaggattatgataaaaaagctggggaaactgaatatggaagcagaggagtagacctcagt
gaatctgatcttctggtagatggagatttaggcgaatatgatttttatgaatataaagaa
tatgaagagaaaccaactgattccactaatgaggagtttggtccaggtgttcctgcagag
actgatatcacagaaacaagcgtgactggacacggggcttatggagaaaagggccaaaag
ggagaaccagctgtgattgaacctggtatgcttattgaaggaccaccaggaccaagagga
cctgctggtcttacgggtcccccaggtttacaaggccctgttggtccaccaggtgaccct
ggtgaaaggggtccacctggtcgccctggtctccctggtgctgatggtttagcaggtccc
ccaggtaccatgttaatgctgccgtttcgctttggtggagacggtgagaagggcccaaca
atctcagctcaggaagctcaagcacaagctattcttcagcaggctaggattgctatgaga
ggtccacctggtcccatgggactcactggaagaccaggtcctgtgggaggacctggagca
gcaggtgccaagggagaaagcggtgaaccaggtccccagggtcctcgtggtgttcaaggt
gcccctggtccaagtggaaaagctggcaaaaggggtcgtcctggagctgatggtgccaga
ggaatgccaggagagcctggtgcaaagggtgacagaggatttgatggtcttcctggcctc
cctggtgacaaaggtaacaggggagaccgtggcccacagggacctcctggcttacctggt
gaagatggatcaagaggagaagatggggaagttggaccaagaggtctcccaggtgaagct
ggtccacggggattattgggccccagaggtacacctggcccccctggacaacctggcatt
gcgggtgttgatggaccttcaggcccaaaaggaaacatgggtcctcaaggggagccagga
cctcctggtcagcaaggaatcccaggcccgcaagggcttcctggtccgcaaggtcctatt
ggacctcctggagaaaaaggacctcaaggcaagcctggcctgcctggccttcctggttcc
gatgggcctcctgggcatcctggaaaagagggtcagtctggagagaaaggtgcattgggg
cctccaggtcctcagggtccaattggctatccaggtcctaggggtgtaaagggagctgat
ggtgtccgtggactcaagggatccaaaggtgaaaagggtgaagatggtttcccaggattt
aaaggtgacatgggccttaaaggtgatcggggagaagttggtcagcctggtccacgagga
gaagatggtccagaaggtccaaaaggtcgagcaggtccatctggggacccaggtgctgct
ggtcccgctggggaaaagggtaagcttggtgtgcccggcttgccaggatacccaggcaga
caaggtccaaagggctcaactggtttcccaggatttccgggtgccaatggagagaaaggt
gcaaggggattacacggcaaaccaggcccaagaggacaacgaggaccaacgggtccaaga
ggctcaagaggtccaagaggtccaactggcaaaccaggtccaaagggtactgcaggcaat
gacggtcctcctggcccaccaggtgaaaggggaccacaagggcctcagggacctgttgga
tttcctggaccaaaaggacctccagggccacctggaaaagatggcttgcctgggcatcca
ggacagcggggtgaaactggttttcaaggaaaaactggtcctcctggccctggtggggtt
gttggccctcagggtcctactggtgagactggcccaattggtgaaagaggtcatccaggt
cctcctggcccaccaggtgaacaaggcctcccaggtgctgcaggaaaagaaggtgctaag
ggtgatccaggccctcaaggtattcctgggaaagatggaccagcaggtcttcgtggtttc
cctggagagagaggcctcccaggagctcagggtccagctggtctaaaaggaggggaaggt
ccacaaggcccacctggcccagttggttcaccaggggaacgtggagcagcaggtactgct
ggtccaattggtctaccaggtcgtcctggacctcagggtcctccaggccctgcaggagag
aagggtgctcctggtgaaaaaggtcctcaaggtccagctggacgtgatggagtacaaggt
cctgtagggcttcctggtcctgctggtccaagtggttctcccggtgaagatggtgacaag
ggtgaaattggtgaaccgggtcaaaaaggtagtaaaggtgacaagggagaaaacggccct
ccaggaccaccaggacttcagggtcctgtaggcgctcctggtatagctggaggtgatggg
gagccgggcccaagaggtcagcaagggatgtttgggcaaaaaggtgacgaaggacctcga
ggcttccctggccccccaggccccattggattgcagggtctgcctggcccaccaggtgaa
aaaggtgaaaatggtgatgtgggcccaatgggtccacctggtcctccaggtccaagaggt
ccccaaggtcctaatggagctgatggtccccaaggcccaccaggctcaattggctctgtt
ggaggtgttggtgaaaagggtgaacctggagaagctggtaaccctggacctcctggagaa
tctggaacatccggtccaaaaggtgaaaggggagaaaaaggtgaggctggtccacccgga
gcagccggaccaccaggtgctaaaggacctccaggtgatgatggccctaagggtaaccca
ggtccggttggttttcctggagatcctggtccccctggggaacctggtccagctggtcaa
gatggtgttggtggagagaagggtgaagatggtgatcctggtcaacctggtccaccaggt
ccttcaggcgaagccggcccacctggtccacctggaaagaggggacctcctggagcaact
ggcgctgaaggcagacaaggtgaaaaaggtgcaaagggtgaacctggtgcagaaggggct
cctggaaaaacgggtccagttggtcctcagggacctgcaggaaaacctggcccggaaggt
cttcgaggtattcctggccctgtgggagagcaaggtctacctggagcaccaggtcaggat
ggccctcctgggcctctgggtccacctggcttacctggcctgaaaggagatccaggttct
aaaggagagaagggacatcctggtttgattggcctgattggacctccaggagaacagggt
gaaaagggtgataggggtcttcctggcccacaggggtctcctggagccaagggtgacgca
ggaatttctggtcctgctggtccacttggaccccctggtcctcctggtttacctggtcct
caaggtccaaaaggttccaaaggatccagtggccctgctggtcaaaagggtgacagtggt
ttacctggtccacctggtcctccaggtcctccaggtgaggtaatccagccactgccaatc
cagtcacctaaaaagactagaagatctcctgattatatggtgtctgatgctggtgataac
attctggattattccgatggcatggaagagatatttggttcattgaattcactgaaacaa
gacattgaacatatgaagtatccaatgggcactcagaacaacccagcccgaacttgcaaa
gacttgcaactctgccacccagacttcccagacggggaatactggattgatcctaaccag
ggctgttctggagactccttcaaagtgtactgcaatttcacagcaggtggggaaacttgc
atctacccagataagaaatctgaaggagttagaatttcatcatggccaaaggagaatcca
ggatcttggtttagtgaatttaagcggggcaaacttctttcctatttggatgttgaaggc
aattccattaatatggtccaaatgacattccttaaactactgagtgcctctgccagacaa
aatttcacttacaattgtcatcagtccgtagcttggcatgatgcatcttctgacagctat
gacaaagcactaaggttcttaggatcaaatgatgaagagatgtcttacgacaacaatccg
tacatcaaagcgcttcatgatggctgtgcatcaagaaagggctatggaaagaccgtgatt
gaaatcaacacacccaaaatagaccaagtgcctatagttgatgtgatgatcaatgacttt
ggtgatcagaaccaaaagtttggatttgaggttggtcctgtctgcttccttggttaa
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integrated database retrieval system
