Anas platyrhynchos (mallard): 101799434
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Entry
101799434 CDS
T02816
Symbol
PATL1
Name
(RefSeq) LOW QUALITY PROTEIN: protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101799434 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apla03019
]
101799434 (PATL1)
Messenger RNA biogenesis [BR:
apla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101799434 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
101799434 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
101799434
NCBI-ProteinID:
XP_027314266
LinkDB
All DBs
Position
5
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AA seq
761 aa
AA seq
DB search
MFRYPSPDECPLDEEEDGFQALGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELEEKP
RGAGQRALPGGEDAELLGEPEDTLAERLTRLVIDSELEDPAIMRAVHTRAPGTQPAPLNA
GIWDGPAVLRRIRGPLLAQEMPSVSVLDYALPQRPPQAREEERDPSERALPRRSSSPVIG
SPPVRAVPIGTPPKQAAVPSFNQQILCPKPVHIRASMQQRYPAPYGERMSPNQLCNVPNS
SLLGHPFPHSVSPVLSHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLPSVNPKLLQGRV
GQMMSPAGGFRAFFGAAPAPPPPSQPQPPPGPASHLQGLRPQPQMFRPDTTHLHPQHRRL
LHQRQQQNRNQHRSLNGSVGDRGGHRGSHQEQARKDPYANLMLQREKDWVSKIQMMQLQS
TDPYLDDYYYQNYFQKLEKLAAAEEVHGDGPKKERTKLITPQVAKLEHAYKPVQFEGSLG
KLTVSSVNNPRKMIDAVVTSRGEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRY
LLSLEGERPALMGERKQKICDMYDNLRGKAAGQERPSDDHFMQIMCIRKGKRLVARILPF
LSPEQAADVLMATARNLPFLIKKDAQDEVLPCLLRPFSHVLYHLPLGTVTSLVQQLTNLP
QSATAPAPTNLHLAAVLQNKFGLSLLYLVLSRGEELQSSDTSTELMQDNQWTELMLLASR
ELLRIPAAALAKPVSPPSNLLSLFSRYVDQQKLNLLETKLQ
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgttccggtacccgtccccggacgagtgcccgctggacgaggaggaggacggcttccag
gcgctgggcgaggaggacgaggacatcgaccagttcaacgatgacaccttcggggccggc
gccgtcgacgacgactggcaggaggcccacgagcggctggcggagctggaggagaagccg
cggggcgcggggcagcgagccctgccgggcggcgaggacgccgagctgctgggcgagccc
gaggacacgctggcggagcggctgacgcggctggtgatcgacagcgagctggaggacccg
gccatcatgcgggccgtgcacaccagggcccccggcacgcagcccgccccgctcaacgcg
ggcatctgggacggccccgccgtgctgcgccgcatccgcgggccgctgctcgctcaggag
atgccgtcggtgtccgtgctggactacgccctgccccagagacccccgcaggctcgggag
gaagagagggacccctctgagcgggcactgccccgccgctcgtcctcccccgtcatcggc
agccccccggtgcgagcggtccccatcggcacccctcccaagcaggcagccgtgcccagt
ttcaaccagcagatcctgtgccccaagccagtgcacatccgggccagcatgcagcagcgc
taccccgctccctacggcgagaggatgtcccccaaccagctctgcaacgtaccgaactcc
tccctgctgggccacccgttcccccacagcgtctctcctgtcctcagccacctgcagaga
gcgcagctgctcggaggagcccaggccggccggatgtctcccagccagttcgcccgagtc
tcaggccttgtcgggagcccgctgccctccgtcaaccccaagctgctgcagggcagagtg
gggcagatgatgtctccagccggcggctttcgtgccttcttcggggctgccccagctccg
ccgcccccatcgcagccgcagccccctccaggccccgcgtcccacctgcagggcttgagg
ccccagccgcagatgttccggccggacacgacccacctgcacccccagcaccgccggctc
ctgcaccagcggcagcagcagaaccgaaaccagcaccgcagcctcaacggctcggtgggg
gaccgagggggccaccggggcagccaccaggagcaggcacgcaaagacccctacgccaac
ctcatgctgcagcgggagaaggactgggtgtccaagatccagatgatgcagctgcagagc
actgacccctacctggatgattattactaccagaactacttccagaagctggaaaaattg
gcagcggctgaggaagtccacggggacggccccaagaaggagcgcaccaaactcatcacc
cctcaggtggccaagctggagcacgcctacaaaccagtgcagttcgagggctcgctcggg
aagctgacggtgtccagcgtgaacaacccgcggaagatgatcgacgcggtggtgacctcc
cgcggcgaggatgacgagacgaaggagaagcaggtccgggacaagcggcgccagacgctc
gtcaccatcgagaagacctacagcctcctcctggacgtggaggactatgagcgacgctac
ctcctgagcctggaaggcgagcggccggccctgatgggcgagaggaagcagaagatctgc
gacatgtatgacaatctgaggggcaaggcggccgggcaggagaggccgagcgatgaccac
ttcatgcagatcatgtgcatccggaaaggaaagcgcctggtggcacgcatcctccccttc
ctgtcccccgagcaggcggccgacgtcctcatggcgacggccaggaacctgcccttcctc
atcaagaaggacgctcaggacgaggtgctgccctgcctgctgaggcccttctcgcacgtc
ctgtaccacctcccgctggggacggtcaccagccttgtgcagcagctcaccaacctacct
cagagcgccaccgcgcccgcgcccaccaacctgcacctcgctgctgtgctgcaaaacaag
ttcggcctgtccctgctctacctggtgctgagccgcggggaggagctgcagagctcggac
accagcacggagctgatgcaggacaaccagtggacggagctgatgctgctggcgagccgg
gagctgctgcggatcccggcggccgccctggccaagccggtgtcccccccctccaacctg
ctctccctcttctctcgctacgtcgaccagcagaagctcaacctgctggagacaaagctg
cagtga
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