Anas platyrhynchos (mallard): 101800135
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Entry
101800135 CDS
T02816
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101800135 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
apla03041
]
101800135 (DDX42)
Enzymes [BR:
apla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101800135 (DDX42)
Spliceosome [BR:
apla03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101800135 (DDX42)
Complex B
101800135 (DDX42)
Complex C
U2 SnRNP specific factors
101800135 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
101800135
NCBI-ProteinID:
XP_038024552
Ensembl:
ENSAPLG00000010544
LinkDB
All DBs
Position
28:complement(3185350..3202639)
Genome browser
AA seq
930 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDNSNVDLPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNAKKLIFATWLKTLLLVWYKKRKRITSSMTVMGTQLHR
PKKSLIPFHLLTIQRLKYPPFEKNFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPG
SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML
IHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKA
LQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDR
QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRL
VEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPIL
VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD
LVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSESSD
RGNNNSVMSNYEAYKPSSGAMGDRLTAMKAAFQSQYKSHFVAASLNNQKTGSSAAGASGW
TSAGSLNSVPTSSAQQNSANPDSPIAAAAAAKGVPGFTSTGNLSSVPTFPSVGVQGYNNN
TTNASTNNREGIGSTGVAPGGGGGGGGGVVRERYNDSRNSRHNEAPRRGEGGGGRYNDVQ
RHGEGGGRHSDAYRHGEGRHGDNHRHTESRHFTDGSGGNRNNGESRNIGEGRNNENRNGE
NRKDANSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtacaaagagaggctttggttttggtggatttgcc
ataacgcctggaaagaaagaggagcccaagctttctcaacagtctcatagtgcttttgga
acagccggttcctctgctgcatttgcgaaatcgggacctccacagctgccttcgttctac
aaaattgggtcaaagcgagcaaattttgatgaagagaacgcgtactttgaggacgaagag
gaagataacagcaatgtcgacttgccatacattccagcggagaattcccccactcgccag
cagtttcattccaaatcggcagactctgacagcgacgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagacttgaagataaagacaaggaa
aaaaagaatgctaagaagcttattttcgctacatggctgaaaaccctactgctggtgtgg
tacaagaagaggaagaggataacctcgagtatgacagtgatgggaacccaattgcaccgt
ccaaaaaaatcattgatccccttccacctattgaccattcagagattgaagtatccgcct
tttgagaaaaatttctatgatgagcatgaggagatcaccagtctcaccccgcagcaagtg
gtggagttacgtcataagctaaatctccgggtctccggtgctgctcctccaagacctggc
agtagctttgctcattttggatttgatgagcaacttatgcatcaaattaggaaatccgag
tatacccagcccactcctatacagtgccagggtgttccagttgcattgagtggcagagat
atgattgggatagctaagactggaagtggaaaaacagcagccttcatctggcctatgttg
attcacatcatggatcaaaaagagcttgaaccaggggacggtcccattgcagtgattgta
tgcccgaccagagagctttgccaacagatccattctgaatgtaagcgctttggtaaggcg
tataatctgcgctcagtagctgtgtatggaggaggaagcatgtgggaacaagccaaagcc
ctccaggagggggcagagatagttgtttgcacaccgggtcgtttgattgatcatgtgaaa
aagaaagctacaaaccttcaaagagtcacttacctcgtgtttgatgaagcagacagaatg
tttgatatgggttttgaatatcaggtcagatcaattgcaagccacgtacgtcctgacaga
cagaccctcttgttcagtgccactttccgtaagaagattgagaaattggcccgagatatt
ctgattgacccaattcgagttgtgcagggagacattggagaggcaaatgaagatgttact
caaattgtggagattttcccttctggccctagcaaatggaactggctgactcgacgcctc
gtggagttcacgtcttctgggagcgttctcctttttgtcaccaagaaggcgaatgcagaa
gagctggctaataacctcaagcaggaggatcacaatctagggctgcttcatggcgacatg
gaccagagtgagaggaataaagtcatttcagaatttaagaaaaaagggatcccgatactg
gtagctactgatgtagcagctcgtgggttagatattccttccattaagactgtgatcaat
tacgatgtggctcgggacatagacacgcacacccacagaattggtcgtactggcagagca
ggcgagaagggagttgcctacactctgttgactcccaaagacagtaacttcgctggtgat
ctcgtccgaaatctggaaggtgctaatcaacatgtttccaaagagctgttggatctagca
atgcagaatccatggtttcggaaatcccgtttcaaaggaggaaaaggcaagaagctgaat
attggtggtggtggcttaggatatcgtgagcgtcctggtctgggatcagaaagctctgac
cgtggaaacaacaacagtgtgatgagcaactatgaagcatataagccatcctctggggca
atgggcgacagacttacagcaatgaaagcagcttttcagtctcagtataagagccacttt
gttgctgcaagcttaaataatcaaaagactggaagctctgctgctggtgctagtggctgg
actagtgctgggagcttgaactcagtaccaacaagttcagcacagcaaaattctgcaaat
cccgacagcccgattgcagctgccgcagcagccaagggtgttccaggtttcaccagcacc
gggaatctgagtagcgttcccaccttcccaagcgtcggagtacagggctacaacaacaac
accacgaatgccagcaccaataatcgagaaggcatcggcagcaccggcgtcgctcctggt
ggtggtggtggcggcggcggtggcgttgtcagagaacgatacaacgacagcaggaacagt
cggcacaacgaggccccgcgccggggagagggcggtggcggtcgctacaacgatgtgcag
cgccacggggaaggagggggccgccacagtgacgcttaccggcatggggagggccggcac
ggtgacaaccatcgccacactgaaagccggcatttcactgacgggagcggtggcaatcgc
aataatggtgagagcaggaatatcggcgagggtaggaacaacgagaacaggaatggtgag
aacaggaaggatgccaacagccgggacaacaagacagatggttttgctgtcccagagccc
ccaaaacgtaagaagagtcgatgggacagttaa
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