Anas platyrhynchos (mallard): 101800697
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Entry
101800697 CDS
T02816
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101800697 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apla03019
]
101800697 (MTREX)
03041 Spliceosome [BR:
apla03041
]
101800697 (MTREX)
03009 Ribosome biogenesis [BR:
apla03009
]
101800697 (MTREX)
03016 Transfer RNA biogenesis [BR:
apla03016
]
101800697 (MTREX)
Enzymes [BR:
apla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101800697 (MTREX)
Messenger RNA biogenesis [BR:
apla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
101800697 (MTREX)
Spliceosome [BR:
apla03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101800697 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
101800697 (MTREX)
Ribosome biogenesis [BR:
apla03009
]
Eukaryotic type
Pre-60S particles
Helicases
101800697 (MTREX)
Transfer RNA biogenesis [BR:
apla03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
101800697 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Helicase_dom4_arc
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
101800697
NCBI-ProteinID:
XP_027302829
Ensembl:
ENSAPLG00000009694
LinkDB
All DBs
Position
Z:18598616..18644469
Genome browser
AA seq
1025 aa
AA seq
DB search
MADAFGDELFSVFEAEPAAARGKAAAAEAARRTGKRPEEAAPGKAKREAESDGREDAVSG
KKPKLEDVVSEDTNLADLMPHVKVQAVETVEGCTHEVALPANEEFKGLKPRTGKPAKEYP
FSLDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQ
KYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYM
RDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQ
HYIFPAGGDGLRLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSNVFKI
VKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKK
LPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVL
FTSACKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSAD
PLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVNKLEEQYNKIAI
PNEENVVIYYKIRQQLAKLGREIEEYIHKPKYCLPFLQPGRLVKVKNEDDDFGWGVVVNF
SKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPAKPDEKGEMQVVPVLVHLLS
AISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQGLKKVIQKV
EAFEHRMYSHPLHNDPNLETVYKLCERKAQIAMDIKAAKRELKKARTVLQMDELKCRKRV
LRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFVFQEN
SSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFKPNLMDVVYTWANGA
SFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFA
ASLYL
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccttcggggacgagctcttcagcgtgttcgaggcggagccggcggccgcc
aggggaaaggcggcggctgctgaggccgccaggaggacgggaaagcgaccggaggaagcg
gcgccagggaaggccaaaagggaggctgagagtgacgggagagaagatgcggtctcgggg
aagaaacccaaactggaggatgttgtatcggaagacacgaatctggcagacctgatgcct
cacgtaaaggtgcaagctgtggaaactgttgaaggttgcacacatgaggttgcacttcca
gcaaatgaagagttcaaaggtctaaagccgagaactggaaaacctgcaaaagaatatccg
tttagtctcgatgcctttcagagagaagcaattctttgtgtagataataaccagtctgtg
ttagtgtcagctcatacatcagctggtaaaactgtatgtgcagagtatgcaattgccttg
gctttgagggagaaacagcgtgtgatatttacgagtccaattaaagctttgagtaatcag
aagtaccgtgagatgtatgaagagtttcaggatgttggtttgatgactggggatgtcacc
attaatcctacagcttcttgtctggtgatgacaacagagatcctgagaagtatgctttac
agaggttctgaggttatgcgagaagttgcgtgggttatttttgatgaaatccactacatg
agagattcggaacgtggtgtagtttgggaagagacaattattttgctccctgacaatgtt
cactatgtgttcctttctgcaaccattccaaatgctcgtcagtttgctgaatggatctgt
catcttcacaaacagccctgccatgtgatttacacagactatcgacctactccactgcag
cactatatattcccagcaggaggagatggattgcgtcttgtcgttgatgaaaatggagac
ttcagagaagataattttaacacagcaatgcaagtgcttagagatgcaggagacttagca
aaaggggaccagaaaggcaggaaaggaggaacaaaaggtccttcaaatgtttttaagatt
gtgaagatgatcatggaaaggaatttccaacctgtaattattttcagcttcagtaaaaaa
gattgtgaagcctatgcacttcagatgacaaagttagacttcaatacagatgaagagaaa
aagatggttgaagaagtattcaataatgcaattgactgtttatcagatgaagacaaaaag
cttcctcaggttgagcacgtacttcctcttctgaagcgtggaattggtatccatcacggc
ggtctgcttcctatcttgaaagaaactatagaaattcttttctctgagggcctaataaag
gccttatttgcaacagagacttttgctatgggaattaatatgccagccaggactgtgctg
tttacaagtgcctgcaagtttgatgggaaagatttccgatggatatcctctggtgaatac
attcaaatgtcaggtcgtgcaggacgccgaggtatggatgacagaggaatagtaattctc
atggtggatgaaaaaatgagtccaacaattggcaaacagcttttgaagggttcagctgat
cctctaaacagtgcattccacctcacatacaacatggtattgaacttgcttcgagtagag
gaaattaaccctgaatatatgttagaaaaatcattctatcagttccaacattacagagct
attccaggagtagtagaaaaggtgaataaactggaagaacagtacaacaaaatagcaatc
cccaatgaagaaaacgtggtcatatactacaaaatccgacagcaacttgcaaaactgggt
agagagatagaagaatacattcacaaaccgaagtattgcttgccatttctacagccagga
agactggtaaaggtgaagaacgaagatgatgactttggatggggagtggttgttaacttc
tctaagaaatcaaatgttaagcctaactctggtgagttggacccattatatgtagtagaa
gtgctactgcactgcagcaaggagagtttgaaaaattctgctactgaggctgcaaagcca
gccaaacccgatgagaaaggagagatgcaggttgttccagttttggtacatcttctctca
gctatcagcagtgtccgactttatataccaaaagacttgaggcctattgacaacaggcaa
agtgtcttaaaatctatacaagaagtacagaagagatttcctgatggagtaccattacta
gaccctattgatgacatgggtatcaaagatcaaggactcaaaaaagtcatccagaaagta
gaggcatttgagcataggatgtattcacatcctcttcacaatgatcccaatttggaaact
gtatacaaactttgtgaaagaaaagcacagattgctatggatatcaaagcagcaaagcga
gagctgaaaaaagccagaactgtcctacaaatggatgaactcaaatgccgcaagcgtgtt
ttgagaaggctggggtttgccacatcttcagatgttattgagatgaaaggacgcgttgct
tgtgaaatcagcagtgctgatgaacttctcctgactgaaatgatgttcaatggtctcttc
aatgacttatccgcagaacaggcaactgcactgctaagctgttttgtgtttcaagagaac
tccagtgaaatgccaaaattgacagagcagttggcaggaccacttcggcaaatgcaggag
tgtgctaaaagaattgccaaggtatcagcagaagcaaaactggaaattgatgaagaaaat
tacttaaattctttcaaacccaacctcatggatgttgtgtatacgtgggcaaatggagct
agctttgctcacatctgcaagatgactgatgtctttgaagggagcatcattcgttgtatg
agaaggctggaggaactgctgcggcagatgtgccaggctgcaaaagctattggaaacaca
gagctggaaaacaagtttgcagagggtattacaaaaatcaagagagatattgtttttgct
gcaagcctttacctgtaa
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