Anas platyrhynchos (mallard): 101801164
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Entry
101801164 CDS
T02816
Symbol
LSM8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla03018
RNA degradation
apla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101801164 (LSM8)
09123 Folding, sorting and degradation
03018 RNA degradation
101801164 (LSM8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apla03019
]
101801164 (LSM8)
03041 Spliceosome [BR:
apla03041
]
101801164 (LSM8)
Messenger RNA biogenesis [BR:
apla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101801164 (LSM8)
mRNA degradation factors
5'-3' decay
Lsm complex
101801164 (LSM8)
Spliceosome [BR:
apla03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
101801164 (LSM8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
101801164
NCBI-ProteinID:
XP_027313591
EnsemblRapid:
ENSAPLG00030023390
LinkDB
All DBs
Position
1:25722095..25727656
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AA seq
96 aa
AA seq
DB search
MTSALEGYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccgcgctggagggctacatcaaccgcactgtcgcagtgataacttctgatgga
agaatgattgtgggaaccctcaaaggttttgatcagaccattaacttgattttggatgag
agccatgaacgagtgttcagttcttcacaaggagttgagcaagtagtgctgggattatac
attgtacgaggtgataatgttgctgtcattggtgagattgatgaagagacagattcagct
cttgatttgggaaacattcgagcagaacctttaaattcagttgtgcattga
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