Anas platyrhynchos (mallard): 101802092
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Entry
101802092 CDS
T02816
Symbol
SLX4
Name
(RefSeq) LOW QUALITY PROTEIN: structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
101802092 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
apla04121
]
101802092 (SLX4)
03400 DNA repair and recombination proteins [BR:
apla03400
]
101802092 (SLX4)
Ubiquitin system [BR:
apla04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
101802092 (SLX4)
DNA repair and recombination proteins [BR:
apla03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
101802092 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
zf-met
B129_C2H2-zf
Motif
Other DBs
NCBI-GeneID:
101802092
NCBI-ProteinID:
XP_038043055
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All DBs
Position
15:6422475..6454189
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AA seq
1881 aa
AA seq
DB search
MDEQDNDFKELWANILGRAKKKPGDAEAAKKAQKRSKSTVARSKLRRGKAAATSQNHHLF
PAAKRTNLSQDLGPKEKALVHKENSDTVACSSGETEQGDGKISPFPASQLSTAASDCSQR
ILTVNALNGSSQTTLSFHPATQPGACSSPTSKMPPLAGPKARVAELVVERMQQFKRVAPE
QLKHSTDDSLPKSVASGDFPDESQEQNSPENDIHDLPSVQHDGALALALQQETKEEVLED
AGLFFCQICQKDLSAMNSTRREQHVNRCLDEMEDAQMSSSSKPLVPECPICGKQFQTPQS
RVSHLKRCAVEMDVPPKMLLQAVQLQVSTLGDAPLQFPSNQPSGSKRKGSSKEDSKNKQK
RAKMETKDEDLLVAMAMSRSLLEHEKQEQAKSVTNVKPVAALPIKWKPGSDKKRRKRGPS
TPPPLLLQDPEKTRKRIQERVAMLLVEEAEFPPTPRLPSSRILEDESGKAAWLLPLPKSR
DCFLWNISALTGPCDPELFYTAGLSPAIAPWKPVQNHKPDNVPPSVGSDQPEASQQIQPD
LSSHDPTCTKVRDQTSDEFKSSISSSMMKSSPEEDGQSLSHSQKDVQNLQNLVELAKEGL
TLTQWKLDVDHIQAAEQSGKELTPSDSPHTGFVPALKEKKFLTSSCKKSSLRLLAEDFSA
MVNNPHLSDVQFQVDSGEVIYAHMFVLYARCPQAVEVVHREGFLVEEDGNAQTRRVLLSD
VTGEAACAFLRYLYAADAGIPAGMLPQVRALAARFGVRELIGECENNTGESQVSSGVDSE
DDLISVRDDKDCEDRAENFQDLLKSVWVGEDEEEAAVSNPECEKEDDNRVGEQELEEIYE
FAATQRKIVQRETELSEGTDGSTCSDTEAALGMNQQMEEEEVKRSESASVSNSFKDLRDD
NDAERPKCDLSAQKEKMQNINRCERVNVAQIPFVPHHSEPQKWDVASHGATTNEGETIRR
CDDGKDSESSQVSCDVEGESHCEKQFSSFHNDTNVNENYEHLFSATQGEYSEPSQMNEGI
KESEKTLCENHVDINDSLLNSKSQKDLSPHRNSLYGSPFKAYVPLFPAVGSSPVSPKSDR
KLAREHVSALKQNKKKKSFPSNEILLQKANELDTASGNENTISPAEHPHTDLNKHMNVPV
LSSPVIRTQDPAAQGNEKCDVIVLSSDDEMELQEDKKSPESGSAPKEMEVSGQLKCTNVE
QGPEIPKPEYNSSVTETEQKSTQVSCVITEKVHISNGVKMSTELPLSSQVDGCTESRQSP
DVSPEKRLHEISSGTDSSWIVPDTPVLTKSRNFSTQTHVTSINSSENTGPKASTRSLAAG
NSNSEIDRNLVKVSEPALSDKHLPLENSISERKPSSSPEAESSSEKSPPVSAADAILLSP
GHTNMKSKCANTSFVSKSVPPGHEQSLEDKTNISVVEIEDSEGEKEISIASLSSSVLLSY
EPPVPVGECWPVEYLSPVRGNSQDSKQVGRTNTRASSSPKPGSSHDQWESPQAQEIKGST
PLQGNPAGRRTTFFCLDKSPIEASTSVGSRPSYLNSKIWDDWDGEEEEDEFPEMLPLSQR
VPAAADANPVKTPEPACQESNQSPRTPVTPMPAYSMMETPQLKKELKRFGVRALPKRQMV
LKLKEIFQYTHRDADSDFEDEIPSSQPPPQKSPAKRCRQSKAARTTGGKRPKASRAVSKR
KQVATASSVLPVGRAVDNPVGPPDKGCAAPKQGPEMTRHPGGAKEQTRSAVSPEGWSLEA
DGEDLMLSTSQKSTTSSGDGSDISFGSQSSFAKEFEACAFASEEEEEEEVPASQAAAREE
EKLEAVRCYIRSNPALYRRILFYEPIELAVLHAELKLNGIKIAKAKLLDFLDAHCITFTT
AGARKEKEQKGKGNKRRRKRY
NT seq
5646 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacaggacaatgattttaaagagttgtgggcaaatattttgggtagagcaaag
aaaaaacctggggatgctgaggcagcaaagaaggcccagaaaaggtcaaagagcactgtt
gcaagaagcaaattaagaagaggcaaagctgctgccacgagccaaaaccatcacctcttt
ccagcagcaaagagaacaaacttgtctcaggatctgggtcctaaggaaaaagctttggtg
cacaaagaaaacagtgacactgtcgcctgtagtagtggtgagactgagcaaggggatgga
aagataagccccttccctgccagccagctgagtacagcagccagtgactgtagccagagg
attctgacagtaaatgctctgaatggctcttcccagactacattatccttccatcctgct
acacagccaggggcctgctcttcacccacctcaaagatgccgccgctcgcaggaccaaag
gcacgggtagcagagctggtagtggagagaatgcagcagttcaagagagtggcacctgag
cagctaaaacacagtacagacgatagcttgccaaagtctgtagccagcggggattttcct
gatgaaagccaggagcagaactcaccagagaatgatatccacgatcttccatccgtgcag
catgatggtgctctggctttggctcttcagcaggaaaccaaagaggaagtcctggaggat
gcaggcttgttcttttgtcagatctgccaaaaggatctctcagccatgaactcgacacgg
cgagagcagcacgttaacaggtgtctggatgagatggaagatgcacagatgtcatcctcc
agcaaaccactggtccctgaatgtcccatctgtgggaagcaattccaaaccccccagagc
cgagtcagtcacttgaagcgctgtgctgtcgagatggatgttccccctaagatgcttctt
caggcagtgcagttgcaggtgtccacgcttggtgatgcacctctacagtttcccagcaat
caaccaagcgggtcaaagcgaaaaggctcctccaaagaggactcaaagaacaagcagaag
agggccaaaatggagactaaggatgaggatttgctggttgctatggcaatgtcacgctct
ctgttggagcacgaaaagcaggaacaggcaaaatcagttacaaacgtgaaaccagtggct
gctttgccaatcaaatggaagccaggatcagataaaaaacggcgtaaacgaggcccaagt
acacctccaccattactacttcaggatccagagaagacccgcaagaggatccaggagcgg
gtagctatgctgcttgtagaagaggctgaattccctcccacccctcggcttccctctagc
aggattttggaggatgaatctgggaaagcagcctggctcttgccattgcccaaaagcagg
gactgctttctgtggaatatcagtgctctcacaggaccttgtgaccctgaactattctac
accgctggattatcccctgcgattgcaccttggaagcctgtgcagaatcacaagccagac
aacgttccaccatcagtaggatccgatcaaccagaagcatctcagcaaattcagcctgac
ctcagttctcatgatcccacttgcacgaaggtcagagaccaaacttctgatgaattcaaa
tcatcaatttcatcatcaatgatgaaatcaagccctgaagaagatgggcaatctttatcg
cacagccagaaggacgttcagaacctgcagaatttagttgagttggccaaggaaggactt
acccttactcagtggaaacttgatgttgaccacattcaggcagcagagcaatcaggaaaa
gaactgactcccagtgactctccacatactggttttgtcccagcactcaaagagaagaaa
ttcctgacaagcagctgtaagaaatcctccctcaggttgctggctgaagatttcagtgca
atggtcaacaacccccatttaagtgacgtgcagttccaggtggactctggggaagtcatt
tatgcccacatgtttgtgttgtatgcacggtgcccacaggccgttgaggttgttcacagg
gaagggttcttagtggaggaggatgggaacgcgcagacgcgccgtgtgctgctgagtgac
gtgacaggagaggcagcctgtgcgttcctgcgatacctttatgctgctgatgctggtatc
cctgctgggatgttgccccaggtcagggctctcgctgccaggtttggtgtgagggagctg
ataggagagtgtgaaaataacactggagagagccaggtgtcttccggcgtggattcagaa
gacgatctgatctctgtgagggatgacaaagattgtgaggacagagctgagaacttccaa
gacctactgaagtcagtatgggtgggtgaagatgaggaagaagcagctgtctcgaaccct
gaatgtgagaaagaagatgacaatagggtgggtgaacaggagctggaggaaatctatgag
tttgctgcaactcagagaaagatagttcaacgtgaaacagaattgagtgagggaacagac
ggcagcacgtgcagtgacactgaggcagccctaggtatgaaccagcagatggaggaggaa
gaagtaaagaggtctgaatctgcttcagtaagtaacagcttcaaagatctgagggatgac
aatgatgcggaaagacctaaatgtgacttgtctgcacaaaaagagaaaatgcagaatata
aatagatgcgaaagagtgaatgttgcacagatcccttttgtgcctcaccacagtgaacca
caaaagtgggatgtagcatcccatggtgccaccactaatgaaggagagaccattaggaga
tgtgatgatgggaaggattccgaatcatctcaggtctcatgtgatgtagaaggggaaagt
cactgtgaaaaacaattttctagcttccacaatgatactaatgtaaatgaaaattatgaa
cacttattttctgcaactcagggagagtactcagagccttcccagatgaatgaaggtatt
aaagaatcagaaaagactctctgtgaaaaccatgttgatattaatgattctcttctgaac
agcaaatcacaaaaagacctctctccacacagaaactctttgtatggttctcctttcaaa
gcttatgtgcccctttttcctgctgtcggctcttcacctgtgtctccaaaatcggacaga
aagcttgccagagagcatgtgtcagcattaaagcaaaataaaaagaaaaaatccttccca
tctaatgaaatactccttcagaaagctaatgagctggatactgcatcaggaaacgagaac
acaatttctccagcagagcatccccacactgatttaaacaagcatatgaatgtcccagtg
ctgtcatcaccagttatcagaactcaagatcctgcagctcaggggaatgagaagtgtgat
gttattgttttatcttctgatgatgaaatggagttacaagaagacaagaagtcaccagag
tcaggctctgctccgaaggaaatggaagtctctgggcaactgaaatgtacaaatgtagaa
caaggtcctgagataccaaaacctgaatataactcatcagtcactgaaacagagcagaaa
tcaacacaagtctcatgtgtcattacagaaaaggtgcatataagtaatggtgtaaagatg
tccactgaattgcctctcagcagtcaagtagatggttgtacagagagcaggcagagtcca
gatgtgagccctgaaaaaaggctccatgaaatttcttcaggtacagacagctcctggata
gtgccagacacaccagttctgaccaaaagcagaaatttctcaacgcagactcatgtcaca
agtattaactcttcagagaatacaggacctaaagccagcacaagaagcctagcagctggt
aatagtaacagtgaaatagatagaaatttagtaaaagtttctgaaccagcattgtcagac
aaacatttgcctctggagaactcaatcagtgaaaggaagccttccagcagcccagaagca
gaatcatcttctgagaaatccccaccagtttctgcagcggatgccattctcctctcccct
ggccacaccaacatgaaaagcaaatgtgctaatacctcctttgtgtccaaatctgtgcct
cctggccatgagcagtcattggaagataaaacaaacatcagcgtggttgagatagaggac
agtgagggggagaaggaaataagtatagcttctttgagcagtagtgtcttgcttagttac
gaacccccagttcctgttggtgagtgctggcccgtcgagtacctgtcaccagtcagaggt
aacagccaggactccaaacaggttggccgtacaaacaccagagcttccagcagtcccaaa
cctggctcttcacatgaccagtgggagagcccacaagcacaggaaattaagggcagtact
cctcttcaaggaaatcctgctggcagaagaacaactttcttctgtctggataagagtcct
attgaggcctctacatcagtgggcagtagaccgagttacctgaactccaaaatctgggat
gactgggatggagaagaagaggaagatgaatttccagagatgcttcctctgtcgcagagg
gtgccagctgcagcagatgcaaatcctgtaaagactcctgaacctgcctgtcaggagagc
aaccagtctcccaggactccagtgacaccaatgccagcttactccatgatggagaccccc
cagctgaagaaggagttgaaaagatttggagttcgtgctctcccaaagcgccagatggtg
ttgaagctgaaggagatattccagtacactcaccgggatgcggactctgactttgaagat
gaaatcccatcctcccagcctcccccgcagaagtcccctgccaaacgctgtaggcagtca
aaggcagcacggaccacaggtggaaagcgtcccaaagcctcgagggctgtgagcaaaagg
aagcaggttgctacggcttcttcagtgctccccgtgggaagggctgttgacaaccctgtt
ggaccccctgataaaggctgtgcagcccccaagcagggacctgaaatgacacgtcaccca
ggaggagccaaagagcagacaaggtcagctgtatctcctgagggatggtctctggaagct
gatggtgaagacctgatgctgtcaacatctcagaagtctacaacttcttcaggggatggc
agcgacatctcttttggttcacagagctcttttgcgaaagaatttgaggcctgtgcattt
gcatctgaagaagaagaagaagaagaggttccagcatctcaggcagcagctcgggaagaa
gaaaagctggaggcagtgaggtgctacatccgttcaaacccagccctgtaccgcaggatt
ctcttctatgagccgattgagctggctgtgctgcatgcagagctgaaactgaatggcatt
aagattgccaaggcaaagctgctggactttctggatgctcactgcatcacctttaccaca
gctggagcacggaaagagaaggaacagaaaggaaaggggaacaaaagacggaggaaacga
tactga
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integrated database retrieval system
