Anas platyrhynchos (mallard): 101802764
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Entry
101802764 CDS
T02816
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
apla
Anas platyrhynchos (mallard)
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
apla03041
]
101802764 (YTHDC2)
Enzymes [BR:
apla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101802764 (YTHDC2)
Spliceosome [BR:
apla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
101802764 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Helicase_C
OB_NTP_bind
HA2_C
R3H
DEAD
HA2_N
AAA_19
Ank_2
nSTAND3
Ank
ATPase
AAA_22
Ank_4
PhoH
AAA_7
AAA_16
AAA_29
UvrD-helicase
SRP54
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
101802764
NCBI-ProteinID:
XP_038026455
LinkDB
All DBs
Position
Z:62464794..62496238
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AA seq
1434 aa
AA seq
DB search
MARPCAAGGGAGGGGGGGGFPRQPGGPQGGSSSGRGRGRALKDIRVDEEVEIAVSAALER
FRYGDEKEMEFPSSFTNIERAFVHRLCQSLGLVSKSRGKGSNRYLTVRKKDGSEVIHAVM
TCCLVPTTKHAIQRLIQRFPVTSKERTELLPKTERGNAFAVEAENREINKASGRLNSGIP
QVPVKRGESEFDYFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCY
KNGIPCRIFCTQPRRLAAIAVAERVAAERREKIGQTVGYQIRLESRVSPKTLLTFCTNGI
LLRTLMTGDSALSTVTHVIVDEVHERDRFSDFLLIKLRDVLQKQSNLKLIISSAALDANL
FIRYFGSCPVIHIQGRPFEVKEMFLEDILRSTGYTNKEMSKYKKEKQREVKQQSTLTEWY
SAQEDSSKTESQRQRSVPNLSEEYNLMDDVGDTVFNQLTEKDANCLEPWLIKEMDSCLSD
IWLHKDIDSFAQVFHLILTENVSVDYRHSETSATALMIASGRGFLSQVEQLISMGASIHC
KSSNGWMALDWAKHFGQTEVVDLLESYSASVEFGNLDESSLVQSSGNDLEAEDRELLKAY
HHSFDDEKVDLDLIMHILYNICHTSDSGAILIFLPGYDEIVSLRDRILFDDKRFADNAHR
YQVFMLHSNMQTLDQKKVLRSPPSGIRKIILSTNIAETSITVNDVVFVIDSGKMKEKSFD
ALSCVTMLKTVWISKASAIQRKGRAGRCRPGVCFRLFSRLRFQNMLEFQTPELLRMPLQE
LCLHTKLLAPINCPIVDFLMKAPDPPPALIVRNAVQMLKTIDAMDPWEDLTELGYHLAEL
PVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTLASQKRAALLCRKRLTAGTFS
DHMALLRAFQAWQKARSDGWERTFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGG
ADIRDVNTNSENWAVVKAALVAGMYPNLVHVDRGNLVLTGPKEKKVRFHPTSVLNQTQYK
KIPPANGQAAAVQALPTDWLIYDEMTRAHRIANIRCCSVVTSVTVALFCGPARLPRNALQ
EPSLLRGDGVSNENSDSELEDEANSNSALLKLDEWLHLKLDSEVACLLLQLRQKWHSLFL
RRMRAPSKPWSQIDETIIKAIITVLSTEEQAAGLQQPSGIGQRPRPMSSEELPLASAWRS
TSSRNSSAETELPDDSSNAEKILMKSMPPEFQPKKYNKKNTSHSKRTSDDRSDQSSARST
DSSSYPSPCASPSSTTSGKASQSPSPRSNMPVRYFIMKSSNLQNLDISQQKGIWSTMPNN
ERKLNRAFWDSSMVYLIFSVQGSGHFQGFARMSSEIGSEKSQDWGSAGLGGIFKVEWIRK
ESIPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWDRIPLAEKTQLS
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atggcccggccctgcgctgccggtggcggtgccggtggcggtgggggcggtggcggcttc
ccccggcagcccggcggcccgcaggggggctcctcgtcgggccgcgggcgcggccgggcg
ctgaaggatatccgcgtggacgaggaggtggagatcgccgtcagcgcggccctggagcgg
ttccgatacggggacgagaaagagatggagttcccttcttcctttacgaacatcgagcgg
gccttcgtgcaccggctgtgccagtcgctcgggctggtatcgaagagtagaggaaaagga
tcaaatcgatacctgactgtaaggaagaaagatggatcagaagtaattcatgcagtaatg
acttgttgtttggttccaacgacaaaacatgccattcagaggttgattcagagatttcct
gtcacaagcaaagaacgaacagaacttctgccaaagactgagcgaggaaatgcatttgct
gtggaagctgaaaacagagaaatcaacaaggcaagtggacggctgaacagtggtatccct
caggttcctgtgaaaagaggggaatcggagttcgattatttcaggcagtcactaccagtt
tttgaaaaacaggaggaaattgtcaaaataatcaaggaaaataaagttgttctaattgtg
ggagagactggatcaggaaaaactactcaaattcctcagttccttcttgatgactgttac
aaaaatggaattccctgtcgtatattttgcactcagccaagacgtttggcagctattgct
gtggctgaacgagtggcggcagaaagaagagaaaagattggccagacagttggttatcag
atccgattagaaagcagggtttctccaaagacactgttaacattttgcactaatggcata
ctacttcgcacactaatgacaggagacagtgctctatcaacagtgacacatgttattgtg
gatgaagtacatgagagggatagattcagtgacttcttgttaataaaactgagagatgta
ttgcagaaacagagtaatttaaaactaatcatttctagtgctgctctagatgcgaatctc
tttattaggtattttggaagttgccccgtaatacacatacaaggaaggccttttgaagtt
aaagagatgtttttagaggacattttacgaagcactggatatacaaacaaagagatgtca
aagtacaaaaaggagaaacagcgagaagtaaaacagcaaagcactcttactgagtggtat
tctgctcaagaagatagtagcaagacagaatctcagagacaaagatctgttccaaatcta
tctgaagagtataatctgatggatgatgtgggtgacacagtatttaatcaactgactgaa
aaagatgcaaattgtcttgaaccatggctaataaaggaaatggattcttgtctttctgac
atctggttgcataaagatattgattcctttgctcaggtgttccatttaattttaactgaa
aatgttagtgttgattataggcacagtgaaaccagtgcaactgcactaatgattgcatca
gggagaggcttcctgagtcaagtagaacaactgattagcatgggagcaagtatccactgc
aaatcatccaatggctggatggctctggactgggctaagcactttgggcagacggaggtt
gttgacctgttggaatcctacagtgcatcagtagaatttggaaatctggatgaaagttcc
cttgttcagtcaagtggtaatgaccttgaagcagaggacagagaattgttgaaagcttat
catcacagttttgatgatgaaaaggtggatctggacctgatcatgcacatactttataac
atctgtcacacttcagatagtggagcaattctaatatttcttcctggctatgatgagata
gttagcttgagggaccgtattctttttgatgacaagagatttgctgacaatgctcacaga
tatcaagttttcatgcttcattcaaatatgcagactttggatcagaagaaagtgcttaga
agtccaccttctggtattcgcaaaataattctttctactaatattgcagaaaccagcatc
acagttaatgacgttgtatttgttattgactccggcaagatgaaagagaaatcttttgat
gcactgagttgtgttacaatgctaaaaactgtgtggatttcaaaagctagtgccatccag
agaaaaggcagggctgggcgctgtcggcctggagtctgcttccgtctcttcagcaggctc
agatttcagaatatgttggaatttcagactccagaacttctacgaatgccacttcaggag
ctttgtttacacacaaaactgctggctccaattaattgtccaattgttgacttccttatg
aaagctcctgatcctccaccggctttaattgtgagaaatgctgtgcaaatgcttaagaca
atagatgctatggatccttgggaggacctcactgaacttggttatcatcttgctgaatta
ccagtagagccacaccttggtaaaatggtgctgtgtgctgttgttttgaagtgcctggat
cccattcttactattgcttgtactcttgcatatcgggacccttttgtcctacctacactg
gcctctcagaagcgtgcagctttgctgtgcagaaaacgtttaactgcaggaacgtttagt
gaccatatggcacttctcagggctttccaggcatggcagaaggcacggagtgatggctgg
gagagaaccttctgtgaaaagaactttctttctcaggccaccatggaaatcatcatagga
atgagaacacaattgcttggtcagcttagagcttcaggttttgtcagagcccgaggagga
gctgatatcagagatgttaacactaactctgaaaactgggctgtagttaaagctgccttg
gtggctgggatgtatcccaatctagtacatgtggacaggggaaacctggttttgacggga
ccaaaagagaagaaagtgcgttttcatcctacctctgttcttaatcagactcagtataaa
aagattccaccagcgaacgggcaagctgcagctgttcaggcactccccacagactggctt
atatatgatgaaatgacaagagctcacaggatagcaaatatcagatgttgttcagttgta
acatctgtcactgtggcactcttctgtggaccagctaggttaccacgtaacgctttgcag
gagccttcattgcttcgaggggatggggtatccaatgagaacagtgatagtgagctggag
gatgaagcaaattctaattcagcgttactgaagctagatgaatggcttcatctcaaactg
gactctgaggttgcttgtttgctgttgcaactcagacagaagtggcatagcttatttctg
cgtcgtatgcgagctccttctaaaccgtggtctcaaattgatgaaacgataataaaagca
atcataactgttttaagtactgaagaacaggctgcaggtttgcagcagccttcaggaatt
ggtcagaggccaaggcctatgtcttctgaagaacttcctttagcatctgcatggaggtca
accagcagtagaaatagctcagcagaaactgaattgcctgatgactcctctaatgctgaa
aaaattttaatgaaatctatgcctccagaattccagccaaagaaatacaacaaaaaaaac
acttcgcactccaaacgaacatcagatgacaggtcagatcaatcatcagcgaggtctaca
gacagtagtagctatcctagcccatgtgctagtccttcttcaacaacatctggaaaggcc
tcccaatctccttcaccaagatcaaatatgccagttcggtacttcataatgaaaagtagc
aacttgcaaaaccttgacatttctcagcagaaaggtatatggtctacaatgccaaacaat
gaacgaaaactaaatagagctttctgggacagcagcatggtttacttaatattttctgtt
caaggatctggacactttcagggatttgccagaatgtcttctgagatagggagtgagaaa
agtcaagactggggatctgccggtttaggaggtatatttaaggtggagtggatccgaaaa
gaaagcattccttttcagtttgcacaccatttgctcaacccttggaatgacaataagaaa
gtacaaataagcagagatggccaggagctggaaccacaagttggagagcagttgctacaa
ctttgggatcgtattcctttggcagaaaaaactcaactgagttga
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