Anas platyrhynchos (mallard): 101804079
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Entry
101804079 CDS
T02816
Symbol
TOPBP1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101804079 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
apla03032
]
101804079 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
apla03400
]
101804079 (TOPBP1)
DNA replication proteins [BR:
apla03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
101804079 (TOPBP1)
DNA repair and recombination proteins [BR:
apla03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
101804079 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
101804079
NCBI-ProteinID:
XP_027305948
Ensembl:
ENSAPLG00000010008
LinkDB
All DBs
Position
2:118652504..118673718
Genome browser
AA seq
1522 aa
AA seq
DB search
MTGGQEPFCVRFVRSPGSSGCFWQALESIKEFQSEEHLQIIEEETALNIKENDKSLYICD
PFRGDVFNHLKKLGCRIVGPQVVLYCMQSQRCVPRAEYPVYNMTMADVTISCTSLEKDVR
EEVHKYVQMMGGRVYRDLNMSVTHLIAGEVGSKKYLVAASLKKPILLPSWVKALWDKSQQ
SMMRYTDVNMEDYACPIFLGCTICVTGLSSLDRKEVQRLTAEHGGQYTGQLKMNECTHLI
VQEPKGQKYECARKWNVHCVSVQWFSDSIEKGFCQDETMYKIEGRSKSSNTPSTSTPTSH
ASKPDTHNFSDVSHISNINLSGVSETACSSAMSSRLDPPPDELENLDISSFQAPEDLLDG
CRIYLCGFSGRKLDKMRRLINCGGGVRFDQLNEDVTHVILGENSNELKHFLDKTLHRPHV
VTAKWLLESFTKGYLCAVEQYIPPNYQPLENPILEQPGVKSIFPKNNSFLKKETVNVTKR
QQAAEDDFLSQYLNNDSTLVEAEKLPSGGFNDVTRVTVQEENNSSVCNGSLGEPSALVEG
GLFARKRFLLLGFGEEDESCIADIIKENAGKIVPPQSRTIADYAVVPLLGCSVKSTVGDV
VTNTWLVTCVEEQVLLDPQSNPLFTPVPVMEGVTPLVDCVLSFSQFTGAERDSLAYLAGL
LGARVQEFFVRKANAKKGMFASTHLVVKEPSGSKYEAAKKWNLPAVTVAWLLQSARTGKR
ADESKFLVENAEAEDKESSVTQLNDKTPATIKSPDSPERPTYLLEAGKKAPVTPLDINRF
QSKAFQAVISHHIGKTASPHAQGALPQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAAL
ETPGGLGQKSRKLSTPLSEVIGRNLKLALANSTRNAEAFTASPQLKAAQPEAEEEPKPLA
DVVICVSKKLSKRQSELNAVAASLGAEYRWSFDESVTHFIYKGGQNDNNKEYRSVKERGI
HIVSEHWLLESAQEYKRLPESLFPHTYNPKMSLDISAVQDVRLSSSGKLPSTGKPAEENE
IIPVDEDDAEDDVTTDQLKETVHTGEEQTVTSESKGVLTQALEMRENFQRQLQEIMSATS
IVRPQGQRGSLSRSSFDGSPTTPDSTRPMRNGRSRVLEALRQSRQALMDINTEPSQSEQI
IWDDPTAREERAKLVSNFQWPNSPSQYPEQVQSNVNKNTDESVFRESIGDSEIAGIAVPE
AEDGDLMEGVKNPVHRDPETPIKDNLIPTPQAPSIAFPLANPAVAPQPKEKAVAEDEKAD
EEPEKHRKFQLSSLNPQERFDYCHLIEELGGIVLEKQCFDPSCTHIIVGHPLRNEKFLAS
MAAGKWVLHRSYLEACRAAGCFVQEEDYEWGNNSILNVLSGINVNQKKLALAAMRWRKKI
HKGRQETGIAEGAFSGWKVILNVDQTKEAGFRRLLQSGGAKVFSGHSASFFKEATHLFAD
FSKLKPDDSRVNVAEAAAQGVNCLKPEYIADYLIQEPPPPMESYCLPEAELYFQNNKELG
TGLSQKRKAAGEMSRVKRSRIR
NT seq
4569 nt
NT seq
+upstream
nt +downstream
nt
atgacaggaggccaggagccgttttgcgtcaggttcgtcaggtctcccggcagctcgggg
tgcttttggcaagctcttgagtccataaaagaatttcagtcggaagaacatctccagatc
attgaagaagaaacagcactcaatataaaagaaaatgacaaatccctttatatttgcgat
ccttttagaggcgatgttttcaatcatctcaaaaagcttggctgtagaattgttggacct
caggtggtcctgtactgtatgcagtcccagcgatgtgtcccaagagcggagtatcccgtg
tacaacatgaccatggccgatgtaacgatatcctgtaccagccttgaaaaagatgttagg
gaagaagttcataaatatgtgcagatgatgggtggacgtgtgtacagagacctcaacatg
tcagtaactcatcttatagctggagaagttggcagcaagaaatacttagtagctgcttct
ctgaaaaaacctattctgcttccctcttgggttaaggcattgtgggataaatctcagcaa
agcatgatgagatataccgatgttaatatggaagactacgcttgtcctatatttcttggc
tgtacaatttgtgtaactggcttaagtagcttggaccggaaagaagtccagcgcctcacg
gctgaacacggtgggcaatacacaggacagctcaagatgaatgaatgtactcacctcata
gttcaagagccaaaaggtcagaagtacgaatgtgctagaaaatggaatgtgcattgtgtg
tccgtgcagtggttttctgacagtattgagaaaggcttctgtcaggatgagacaatgtat
aaaatagagggcagatcaaaatcaagtaacacacccagtacctcaacgcctaccagtcac
gccagcaaacctgatactcataacttttcggacgtcagccacatctccaatatcaatttg
agcggtgtcagtgaaactgcttgtagttctgctatgagcagcaggctggatcctcctcct
gatgagctggaaaacttggacataagttcttttcaagcccctgaagatttattagatggc
tgtcgaatctatctatgtggcttcagtggcaggaagctggacaagatgagaaggctcatt
aactgcggtggtggtgttcgatttgatcagcttaatgaagatgttacccatgtcattctg
ggggaaaacagtaatgaactgaaacacttcttggacaagacgcttcacaggcctcatgta
gtgacagcaaaatggttgctggagtcatttactaaaggttatctatgtgcagtggagcaa
tatatccctcccaactaccagccgttagagaatccgattttggagcaacctggcgtgaag
tcaatttttcccaaaaacaacagttttttgaagaaagaaaccgtgaatgttacgaagcgc
cagcaagctgcagaagatgacttcttgtctcaatatctaaataatgattctacgttagtt
gaagctgagaaactaccatctggtggctttaatgacgttactcgtgtgactgttcaagaa
gaaaataattcttctgtctgtaatggttctttgggagagccttctgcactggttgaagga
ggcttatttgccagaaagagatttcttcttctgggttttggtgaagaagatgagtcctgc
attgcagatattataaaggagaacgctgggaaaattgtgccgccgcaaagcagaaccatt
gcagactatgctgtggtgcctttactgggatgttctgtgaagtcaactgttggtgatgtt
gtcaccaatacgtggctggtaacatgtgtggaagagcaggtccttttagatccccagtcc
aatccacttttcacaccagtcccagtaatggaaggagttactcccttggtggactgtgtt
ctttcctttagccagttcactggtgcagagagagattccctagcttatctggcaggactg
ctaggagcaagggtccaggaattctttgtgcgaaaagccaatgcaaaaaaggggatgttt
gccagcacgcatctcgtggtgaaagagccgagtggttccaagtacgaggctgcaaagaaa
tggaatttgcctgcggtcactgtagcttggcttttgcagtctgcaaggacaggaaagaga
gcagatgagagcaagttcttggttgaaaatgcagaggctgaagataaggagagttccgtt
actcaacttaatgacaagacaccagcaactattaaatctcccgattctccagaacgacct
acttatctgcttgaagctggaaaaaaagcacctgtgacccctcttgatatcaacaggttc
cagagtaaagctttccaagctgtgatctctcatcacattgggaagaccgcaagccctcat
gcacaaggggcactgccacaaaaagaaccgtctttgcaccttgacacaccatcaaagttt
ctttccaaagacaagttattcaagccttcctttgatgtaaaggatgctctggcggctttg
gaaactccaggaggccttggtcaaaaaagcaggaagctgagcacacctctctctgaagtc
attggcaggaacttgaaattggcactggcaaacagcacacggaatgcagaagcttttact
gccagccctcagttgaaagctgcacagccagaagcggaagaagagcccaagcctctagct
gatgttgttatctgtgttagtaaaaagcttagtaagaggcaaagtgaactgaatgcggta
gcagcttctcttggcgcagagtacagatggtcttttgatgaatcagtaacacacttcatc
tacaagggagggcaaaatgacaacaacaaggagtatagatccgttaaagaacgggggata
catattgtttcggaacactggcttttagagagtgcccaagaatataaacggcttcctgaa
tctctctttcctcacacctacaatcccaaaatgagtctggacatcagtgcagtgcaggat
gtcaggctttcctcctcgggtaagcttccatcaactggaaaaccagcagaagaaaatgag
attattccggtggatgaagatgatgctgaggatgatgtcactaccgaccaactaaaggaa
acagtccatacaggagaagaacaaaccgtaacaagtgaatccaaaggagttttgacccaa
gcactagaaatgagggagaacttccagagacaactgcaggagatcatgtctgccacatca
atagtgagaccacaaggacagagaggatccctttcgaggagcagttttgacggttctcca
actactcccgatagcacacggcccatgcgaaatggccgcagtagggttttggaagctcta
aggcagtcccgtcaagcacttatggatataaacaccgagccttcccagagtgagcagatc
atttgggatgaccctactgcaagggaggagagagcaaaacttgtcagcaactttcagtgg
cccaacagtccttcccagtacccagagcaagttcagagtaacgtcaataagaacacggat
gagtctgtcttcagagaatccataggtgattcagagattgctggtatagctgttcctgag
gctgaggacggagatttgatggaaggtgtaaagaatcctgtacacagagatcctgaaaca
cccattaaggataacctgatccccactccacaggctcccagcattgctttccctctggct
aaccctgccgtggcaccacagcccaaagaaaaggccgttgcagaagatgagaaggctgat
gaagagccagaaaaacaccgtaaatttcagctgtcttctcttaatcctcaagaaagattt
gattactgccatctgattgaggaattaggtggaatagtacttgagaagcagtgctttgat
ccaagttgcacacacatcatcgtgggccatcctcttcgaaatgaaaaattcctggcctcg
atggcagctgggaagtgggtgcttcatcgttcctacctggaggcatgtcgagcagctggc
tgctttgttcaggaagaagattatgagtggggaaataattccatacttaatgttttgtct
ggaatcaatgtaaaccagaagaaactagcactcgcggccatgagatggaggaaaaaaatt
cataaaggaaggcaagaaactggtattgctgagggagccttcagtggctggaaagtgatc
ctgaatgttgatcagaccaaggaagcagggttccgacgccttcttcagtcaggaggagca
aaggtgttttctggtcattccgcatctttcttcaaagaagcgactcatctctttgctgac
ttcagtaagctgaagccagacgactcccgggtgaacgtagccgaggcagcagcccaggga
gtgaactgcttgaagcccgagtacatcgccgactacctcatccaggagccacctcccccg
atggagtcttactgcctgccagaagctgaactttattttcagaacaacaaagaacttggg
actggattatcccagaaaagaaaagcagcgggggaaatgagcagagtcaagagatccagg
atacgctga
DBGET
integrated database retrieval system
