Anas platyrhynchos (mallard): 101804459
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Entry
101804459 CDS
T02816
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101804459 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
apla03041
]
101804459 (SF3B1)
03036 Chromosome and associated proteins [BR:
apla03036
]
101804459 (SF3B1)
Spliceosome [BR:
apla03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101804459 (SF3B1)
Complex B
101804459 (SF3B1)
Complex C
U2 SnRNP specific factors
101804459 (SF3B1)
Chromosome and associated proteins [BR:
apla03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
101804459 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
101804459
NCBI-ProteinID:
XP_027317590
Ensembl:
ENSAPLG00000003993
UniProt:
A0A8B9TC20
LinkDB
All DBs
Position
7:complement(38077845..38100192)
Genome browser
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatattgaagcacagattcgagaaattcaagga
aaaaagcctgctcttgatgaagcacaaggagtaggccttgattccacaggatattatgac
caagaaatctatggtggcagtgacagcagatttgctggatatgtaacttctattgcagca
actgaattggaagatgatgatgatgactacccttctacaagcttgcttggccagaagaag
ccaggataccatgctccagtggcattgcttaatgacatcccacagtcaactgaacagtat
gatccttttgcagaacaccgtccgcaaaagattgcagatcgggaagatgagtacaaaaag
cacaggcggatgatgataatttcccctgagcgtcttgatccttttgcagatggagggaag
acaccagatcctaaaatgaatgccagaacatacatggatgtcatgcgtgaacagcattta
acaaaagaagagagggaaattaggcagcagctagctgaaaaagctaaagctggagagctt
aaagtcgtcaatggagccgcatctcagccaccttcaaaacgcaagcggcgttgggatcag
acagctgatcagacccctggtgctacaccaaaaaaattatccagttgggatcaagcagag
actcctggacatacaccatctctgcgctgggatgaaaccccaggccgtgccaagggtagc
gaaactcctggtgccaccccgggctcaaaaatatgggatcctactcccagtcatacacca
gcaggggctgcaacacctggacgggacacacctgggcatgcaacaccaggccatggaggt
gccacttccagcgcacgtaaaaatcgatgggatgaaacacctaaaacagaaagagatact
ccgggacatggcagtggatgggctgagactcctcgtacagatagaggtggtgattccatt
ggtgagacaccaaccccaggagcaagtaaaagaaagtcacgatgggatgaaacacctgct
agccagatgggtggcagcactcctgttctgacacctggcaaaacacccattggtacacca
gctatgaacatggcaactccgacaccaggtcatatcatgagcatgactcctgaacagctg
caggcttggcgttgggagagggaaattgatgagagaaacagaccactttctgatgaggaa
ttggatgctatgttcccagaaggatataaggttcttcccccaccagctggttatgtaccc
attcgcactccagcccgtaagcttacagcaactccgacgcctttgggtggtatgactgga
ttccacatgcagaccgaagaccgcactatgaagagcgtcaatgaccagccatctggcaat
cttcctttcctaaaaccagatgatatccaatactttgataaacttctggttgatgttgat
gagtcaactctgagtcctgaagaacagaaggagaggaagataatgaaattacttctgaaa
ataaagaatggcacacctcccatgagaaaggctgctttgcgacaaataactgataaagct
cgggaatttggagcaggaccattgtttaaccagattctgcctctgctgatgtcaccaaca
cttgaagatcaggagcgtcacttgcttgtcaaagtcatagacagaattctctacaaactg
gatgacttggtccgaccatatgtacacaagatccttgttgtcattgaaccactgctgatt
gatgaagactattatgccagagtggaaggcagagaaattatttcaaacttggcaaaggct
gctggtttggcaacaatgatctctacgatgcgtcccgatattgataatatggatgaatac
gtccgaaacacaacagctcgagcctttgctgttgttgcctctgctttgggcattccttct
ctgttaccgttcttgaaagctgtctgtaaaagcaaaaagtcctggcaggctaggcatact
ggcatcaagattgtgcagcaaattgctattcttatgggttgtgctatcttgcctcatctc
agaagcttggttgaaattattgaacatggtcttgtggatgagcagcagaaagttcgtacc
atcagtgctttggctattgctgccttggctgaggcagctactccctatggtattgagtcg
tttgattctgttctgaagcctttatggaagggtatacgtcaacacagaggaaagggtttg
gctgcctttttgaaggctattggttatctgatcccacttatggatgctgagtacgcgaac
tattacaccagagaagtcatgctaattcttatcagagagttccagtctcctgatgaagag
atgaaaaaaattgtattgaaggtggtcaagcagtgttgtggtacggatggtgttgaagca
aactacattaaaacagagatcctgccaccatttttcaaacacttttggcagcacagaatg
gcgttggacaggagaaattacagacagttggttgatacaacagtggagctggcaaataaa
gttggagcagctgaaattatttctagaattgtggatgatctgaaagatgaggctgagcag
tacagaaaaatggtcatggaaacaattgagaagataatgggaaatctgggtgcagcagac
attgatcataaactggaagaacaacttattgatggtatcttgtatgcctttcaagaacag
accacagaggattctgtgatgctgaatggttttggcacagtggttaatgctctaggcaaa
agagttaagccctacttgccacagatctgtggtactgttttgtggcgtttgaacaacaaa
tcggctaaagttcggcagcaggctgctgacctgatctctcgtactgcagttgtcatgaag
acttgtcaagaggaaaaactgatgggacatttgggagttgtgttgtatgagtacctgggt
gaagaatatcctgaagtattgggcagcatacttggagcgcttaaagctattgtgaatgtt
ataggtatgcacaagatgacaccacctatcaaagatctgctgccacggcttacgcctatt
ttgaagaacagacatgagaaagtacaggagaattgtattgatcttgttgggcgaattgca
gatcgaggtgcagaatatgtttctgcaagagaatggatgaggatctgctttgaactgctt
gaattactaaaagctcacaagaaagctattcgaagagccacagtaaacacttttggttat
attgcgaaagctattggacctcatgatgtattggctacactgctaaataacttgaaagta
caggaaagacagaacagagtatgtactacagtagcaattgctattgtagctgaaacatgc
tcccctttcacagtgctgcctgcactcatgaatgaatacagagttccagaactgaatgtc
cagaatggtgtgttaaaatctctttctttcctgtttgaatacattggagagatggggaaa
gattatatttatgctgttacaccattgcttgaagatgctttaatggacagggatcttgta
cacaggcaaacagccagtgccgtggtgcagcacatgtctcttggtgtctatgggtttggc
tgcgaagattcccttaatcatttgctaaattacgtatggcctaatgtgtttgaaacctcc
ccacatgtcattcaggcagttatgggagctctggagggcctcagagttgctatcggtccg
tgcagaatgttgcagtattgtttacagggtttgtttcaccctgcccggaaagtcagagat
gtctattggaagatttataattccatctatattggatcacaggatgctctgatagcacat
tatccaagaatctataatgatgaaaagaacacctatattcgttatgagcttgactacatc
ttataa
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