Anas platyrhynchos (mallard): 101804910
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Entry
101804910 CDS
T02816
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla04382
Cornified envelope formation
apla04510
Focal adhesion
apla04512
ECM-receptor interaction
apla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101804910 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101804910 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101804910 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
101804910 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
apla04147
]
101804910 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
apla00536
]
101804910 (COL4A1)
Exosome [BR:
apla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101804910 (COL4A1)
Glycosaminoglycan binding proteins [BR:
apla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101804910 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101804910
NCBI-ProteinID:
XP_027300111
Ensembl:
ENSAPLG00000008264
LinkDB
All DBs
Position
1:complement(145802072..145931293)
Genome browser
AA seq
1669 aa
AA seq
DB search
MWLWLGFGLLLSAELDTVAAAGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGPEG
PPGPPGLKGDTGEPGLPGTKGTRGPPGPSGFPGNPGLPGIPGQDGPPGPPGIPGCNGTKG
ERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVIGLLPSSVLKGEKGFPGQPGLPGPPGTA
GFQGPMGPPGLPGEPGPPGPPGPPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPSPHAK
EKGSEIIKGEKGEQGQKGEQGIPGLPGSAFRGEKGEPGAPGPQGKPGKDGEPGPKGQPGL
PGGFGIPGRPGEPGAKGEKGDRGPQGPPGRVIDTGPMDAFGEKGDPGVSGLPGQKGQKGE
KGFPGLQGIPGTPGRPIPDRVGSPGVPGQRGEKGEKGSPGFPLPGPPGRDGYPGPPGLPG
PPGPPGVTDGIDQCQQGQPGAPGIPGPPGQHGFPGEMGEKGEKGETCTLCDKVGPPGLPG
PQGPPGPAGFPGQSGFKGDRGLPGLEGLPGLPGPPGAPGLIGAPGAKGEPGDFSYDTILK
GEKGDPGFPGQPGIPGREGTPGKDGLPGPQGPKGASGTAGLKGERGPPGQPGFPGVRGER
GFPGPPGIGTAGLPGDKGDRGFAGTPGLPGLPGAKGEAGRTIPLPGPPGADGLPGPPGFP
GPQGDKGNPGLPGIPGLPGEKGAVGQPGIGFPGPPGPKGFQGQPGSPGLPGTPGTPGLDG
LPGTPGLQGQKGEPGVGLPGPKGLPGPPGPAGIPGEKGNPGLPGLRGEQGFPGIPGQQGF
RGDPGLPGLQGLPGTPGAPGVGPKGLPGPAGQPGPQGPPGVPGIKGERGFPGIPGLDMPG
PKGDKGSQGQPGVPGSVGLPGLPGPQGSIGLKGSEGAKGEMGVMGTPGLPGTPGPVGDRG
LPGEKGSPGFKGVVGPQGDPGVKGDKGEAGLPGVPGSMDTMDMVSLKGQKGDPGEKGDHG
PTGEKGLRGEYGEPGIPGRDGEPGTPGHPGPKGDQGPPGFPGEPGIPGQKGSVGEMGLPG
TPGEKGLPGVPGSPGTPGFPGQKGEKGDKGAAGFPGIGFPGSPGEKGEPGRTGSPGLSGD
KGEKGNVGIPGIPGAPGPKGSPGMAGFPGSPGRHGEKGEKGLPGLSGIPGLKGEPGEPGV
PGPAGSIGQKGEPGYDGIPGAAGAKGEQGFPGRGFPGSPGAKGDKGAKGDVGFPGSPGSP
GIPGLKGEPGYAGPPGPKGNQGLPGLPGIAMEGPKGDRGPQGQPGLPGLPGPMGPPGPPG
LKGAKGEQGSEGWPGTPGGPGVKGDPGFQGLPGSPGLPGDIGQKGDLGPPGVPGVPGPKG
SPGFPGLKGERGDQGLPGSKGLQGPPGPPGPFQLIKGEPGLPGPVGPVGLKGFPGLPGPK
GQQGVTGPSGVPGPPGSPGFDGKPGQKGEVGPYGPPGPRGFPGPPGPEGLPGAMGPPGAA
SVAHGFLVTRHSQTIEEPLCPSGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVIAV
HSQTIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRKT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgtggctgtggctgggcttcgggctgctgctcagcgcagagctcgacaccgtggccgcc
gcgggttgttccggttgtggaaaatgtgactgcagtggagtaaaagggcaaaagggagaa
agaggcttgccgggtctacagggtgtgattgggtttcctggaatgcaaggacctgaaggt
cctcctgggccaccagggcttaagggtgatactggagaaccaggactgccaggaacaaaa
ggaacaagaggcccaccaggaccatcaggatttccaggaaacccaggccttcctggcatt
cctggacaagatggccctcctggtccacctggcattccaggatgtaatggaacaaagggt
gaaagaggtccagtaggtcccccagggttaccaggactgactgggagcataggaccccca
ggacctcctggaatgaagggagatccaggtgaagtgattggtcttttaccttctagtgtg
ctaaaaggtgaaaaaggctttcctggccaacctggactacctggtccacctggaactgca
gggtttcagggaccaatggggccaccagggcttccaggagaaccaggtcccccagggcca
ccaggacctccaggcgagaagggctacatgggtttgggctttcagggtccaaaaggtgaa
aagggagaacaaggagtccgtggtcccccagggccaccaggaccttcaccacatgcgaaa
gaaaaaggaagcgaaatcataaagggagaaaagggtgaacaaggtcaaaagggagaacag
ggaatcccaggattgccaggctcagctttcagaggagaaaaaggtgaacctggggcgcct
ggtccacagggaaagcctggaaaagatggcgagccaggaccaaaaggacaacctggtttg
cctggagggtttgggattccgggacggcctggggaacctggtgctaagggtgaaaaaggt
gatcgaggtcctcaaggtcctccaggaagagttatagatactggaccaatggatgctttt
ggtgaaaagggagaccctggagtttcaggtttgcctggacaaaaaggtcaaaaaggtgaa
aaaggttttcctggattacaaggaatcccaggaactccaggtcgaccaattccagacaga
gtaggatcacctggtgtccctggacagagaggtgaaaaaggtgaaaagggttctcctgga
ttccctttacctggaccccctggaagagacggttacccaggccctcctgggctccctggc
cctccaggtcctccaggtgtaacagatggaattgatcaatgccagcaggggcaacctggt
gcaccaggtatacctggacctccagggcaacatggatttccaggagagatgggagagaaa
ggtgaaaaaggagaaacctgtactttatgtgataaagtaggacctcctggacttccagga
ccacaaggaccaccaggtccagcaggttttccaggacaatcaggtttcaagggtgacaga
ggcttacctggacttgaaggccttccagggttacctgggcccccaggtgctccaggactt
atcggcgccccaggggcaaaaggagaaccaggagatttttcttatgatactatcctgaaa
ggtgaaaagggagatcctggtttcccaggacaaccaggtattcctggaagagaaggaaca
ccaggaaaagatggattgccaggtccacagggtccaaaaggagcatcgggtacagctggc
ttgaaaggagaacgtggtccccctggccaacctggattccctggagtacgtggtgaaaga
ggttttcctggccctcctgggataggcactgcagggttacctggtgacaaaggagacaga
ggctttgctggaaccccaggtttaccaggccttccaggggcaaagggtgaagcaggacga
actataccactccctggacctcctggggcagatggccttcctgggccacctggtttccct
ggaccccaaggtgacaaagggaatcctgggcttccagggatacctggcctgccaggagaa
aaaggtgctgttggacagccgggtatagggttccctgggcctccgggacccaaaggtttt
caaggtcagcctggctcacctggtctaccggggactccaggaactcctggcctggatggt
ttgccaggtacaccaggtttacaaggtcaaaaaggtgaacctggtgtaggtctccctggc
cctaaaggattaccaggccccccaggcccagctggcatccctggagaaaagggaaatcca
ggactgcctggcttacgtggcgagcaaggattcccaggcatacctggacagcaaggattc
agaggtgaccctggcctcccaggactgcaaggcttgccaggcaccccaggtgcaccaggg
gtgggcccaaagggattgccagggcctgctggacagccaggaccccagggaccaccagga
gttcctggaataaaaggagaaaggggtttccctggtatcccaggtctagatatgccagga
ccaaaaggcgataaaggtagccagggtcagcctggagtaccagggtctgtggggttacct
ggcctgccgggtccacaagggtctattggactgaaaggatcagaaggagccaaaggagaa
atgggagttatgggaactccaggactgccagggactcctggaccagttggagatcgaggg
ttgcctggtgaaaaaggtagcccaggtttcaaaggggtagttggaccacagggtgatcca
ggtgtcaaaggggataaaggtgaagctggtctcccaggagtacctggaagcatggatacc
atggacatggttagtctcaaaggccaaaagggagatccaggagaaaaaggggaccatgga
ccaacaggagaaaaggggttacgtggggagtatggagaaccaggaattccaggaagggat
ggtgaacctggtactccaggacatccaggaccaaaaggtgatcagggccccccaggattc
ccaggagaaccaggaattccaggacaaaaaggatcagttggtgaaatgggtttgccagga
acacctggagaaaagggtctgcctggagtaccaggttcaccaggcacaccagggttccct
gggcaaaaaggtgaaaaaggagacaaaggagcagcaggttttcctggaattggctttcca
gggtctcctggtgagaagggagaacctggaagaacgggtagtccaggtttatctggagac
aaaggtgaaaagggtaacgtaggaattccaggaataccaggtgccccaggtcccaaagga
tctcctggcatggcaggatttccagggagccctggccgccatggagaaaagggtgaaaaa
gggcttcctggcttaagtggcatcccaggtttaaaaggagaaccaggtgaacctggtgtt
ccgggtcctgctggttccattggtcagaagggtgaaccaggttatgatgggattccgggt
gctgctggcgcaaagggtgaacaaggttttccaggtagaggatttccaggatctccaggt
gcaaagggagacaaaggtgcgaaaggcgatgtgggtttcccaggatccccaggaagtccg
gggataccaggtctaaaaggagaaccaggatatgccggtccaccaggccctaaaggcaac
caaggtcttcccggactaccaggaattgcaatggagggccctaaaggagacagaggaccc
caaggtcaacctggccttccaggtttaccaggtccaatggggccaccggggccaccaggt
ctgaaaggggccaaaggagagcaggggagcgaaggctggcctgggactcctggaggtcca
ggagtcaaaggtgatccgggtttccagggtctgccaggtagtccaggtttaccaggagat
atcggtcaaaagggtgatctagggcctccaggagttccaggagttccaggtccaaaagga
tctccaggcttcccaggccttaagggtgagcgaggtgaccaaggtcttcctggatctaaa
ggtttacaaggcccaccgggcccaccaggtccttttcagcttatcaaaggagagcctggt
ttacctggccctgtaggaccagttggtctcaaagggttcccaggacttccaggtcccaaa
ggacagcaaggggtaacaggaccttcaggtgtacctggaccgcctggtagtccagggttt
gatggcaaacctgggcaaaaaggagaagttggtccttatggtcccccagggcccagagga
ttccctggtccacctggtcctgaaggtttgcctggggctatgggcccaccaggtgcagca
tctgttgctcatggcttccttgttaccagacatagtcaaaccattgaagaaccattatgt
ccttcgggaacaaggctcatttatcatggctactccttgctttatgtacaaggcaatgaa
agagcacatggccaagatctgggcacggcagggagctgtcttcgtaaatttagtactatg
cctttcttattctgcaatatcaacaacgtatgtaactttgcatcaaggaatgactattcc
tactggttgtccacgcctgaacccatgccaatgagtatggctcctatcactggggaaaat
atcaggccattcatcagcagatgtgccgtgtgtgaagcccctgctatggtaatagctgtt
cacagtcaaacaattcaaataccaccatgtcctgaaggctggagttcactttggattggt
tactcctttgtcatgcacaccagtgctggtgctgagggctctggccaggccctggcatct
cctggttcctgcctagaggagttccgcagcgctcccttcattgaatgccatggccggggc
acctgcaattattatgcaaatgcttacagcttctggcttgccactatagagaggaatgag
atgttcaagaaaccgactccgtcaactttgaaagcaggggatctgcgctcaaacgttagc
cgttgtcaagtctgtatgagaaaaacataa
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