Anas platyrhynchos (mallard): 101804954
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Entry
101804954 CDS
T02816
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
apla
Anas platyrhynchos (mallard)
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
apla03009
]
101804954 (PDCD11)
Ribosome biogenesis [BR:
apla03009
]
Eukaryotic type
90S particles
Other 90S particles
101804954 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_Syf1_CNRKL1_N
OB_RRP5_4th
HAT_PRP39_N
Suf
OB_RRP5
TPR_14
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
TPR_19
ARM_TT21
TPR_15
ARM_TT21_5th
TPR_CcmH_CycH
TPR_16
TPR_12
Motif
Other DBs
NCBI-GeneID:
101804954
NCBI-ProteinID:
XP_027316494
Ensembl:
ENSAPLG00000010301
LinkDB
All DBs
Position
6:24622087..24646284
Genome browser
AA seq
1840 aa
AA seq
DB search
MASIEENFPRGGIQKKPTEKTGKAPKPTTEQDNLFDVRHEEQSQKRKRNQEDLGKRKKFK
ADRKAGAKDNTMNIEPLTIEHLCEGMLLLGCIKEVSDFELVISLPNGLTGFVPVTQISDA
YSKMLSKQVAQGEVLEDLHSLLDMYSPGMLVRCIVTSVEKSADGRRSIKLSINPKNVNRG
LNASALTSGMLLSGFVSSAEDHGYLIDIGVNGTHAFLPRQKAQNYIKAVKRGPDLKIGQN
LNCVIEQVKNEGRIVRLSVDRSEVAASLATEQQNWTLSNLLPGLVVKAKVQKVDPLGISL
TFLSSFTGIVDFMHVDPDKSINYSPNQVVKACILSVHPTSKVVRLTLRQSFLNPGGSPNQ
LSNDRIGAVVEESTVKAFYKQFGAIFELDDGTHAFARLKHLSKNRKSFKPAAFKAGCKHK
CRIIDYSLMDEMCILSLKYQVIGARFLQYQDIHTGDVVQGRVLALKPIGMQVKVTDGIKG
LVPSLHLADVILKQPEKKYNVGDEVKCRVLECNPAEKKLFLTLKKTLIQSKLPILSKYED
AEPGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELSAEPISCPDKVFQEGQVVKVMVLK
CEPEQERLLLSFKLSSTSAPEGKSEHTPKKKQEVKYQIGEMVDVKVLKKKENGLEVSILE
DEGNVIASLPTVYLSDFVANCKLLWHCLQEGDVLPRVMCLSDKGDRIILCRKSAVISAVQ
EEQVVRNFSEIQPGMLLTGYVRNVMHFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVV
GQTVIAKVMSTDEEKQRVLLNLKVSECSSGNPAAESFSLLNQYFKEVKEIRNLLKRRESG
IARSLCELMPGKELQLVVQDVKEDGSALFSGSCVKGLTVTATRYHLGDKSIAPGEKTKGL
VLHVDVLTSKVYVSLREELLKQRPKQQLKENSQHSAIVQHIAEEFAIVSLETGQLAAIPI
ASHFNDTFRFDSEKLKVGQTIYATLKMVKVNDHGVVLAVQDPAKKNVFVRVRKESETTLE
EMLAAAVTHSLSVGDIVTGTVKSVKPTHVTVAIDDKLTGSIHASRILDEVPIDSFPTHTL
KAGQKVTARVIGGRDVNTHRYLPITHPHFTRSIPELSIRPSEIEGKAETLKDGTLKKPEL
YNVGQTVTCFVKKYNVLKNWLEVEVSPDIRGRVPHLMLSPSTKVLKHPEKNFKNGQALSA
TVTGTGVTETNLFLSLIGIPSLQQGTITVGVIAKMIPHVGLTITLPGGKTGKVSIFHLSD
KYTENPLSDFKVGKVVRCYILANENGKIQLSLRQSRLNPRNSSKVEDPEIMSTKDVKKGQ
LVRGYVKSVTPSGVFFGLSASLQGRILFQNVSIYYVQKHSLYEKYLPEGKFLTAKVLGVN
KKENHIELSLLPEDTGMPSVLPESLGLPRYSAEEEKREEEKREEDKEKKEEHKLKTKRRR
KSSEIEQEAKPKKRKVCPTDENDSGIEVYYREEEDGDQEEEAAENKSKLRKRGEAPRLQV
STGFTWDEDMKAVDMAVLNQKEESSESEEEEENPQSKPKKQTKKEKELEKQKKEKELCKL
EAALMDPSRQPQSADDFDRLVLSSPDSSILWLQYMAFHLQATEIEKARAVAERALKTICF
REEQEKLNVWVALLNLENMYGTEETLMKVFERAVQYNEPLKVFQHLCDIYANSEKYKQAE
ELYHTMLRRFRQEKSVWLKYASFLLKQGQTEATHRLLERALKALPTKEHVDVISRFAQLE
FRFGDTEHAKALFDSTLNSYPKRTDIWSIYMDIMIKHGSQKEVRDIFEKVIHLNLAPKKM
KFFFKRYLDYEKKYGTEETILAVKTAALEYVEAKSSLADA
NT seq
5523 nt
NT seq
+upstream
nt +downstream
nt
atggcatccatagaagaaaactttccccgagggggcatccagaaaaaacccacagagaaa
acgggaaaagcacccaaaccaacgacagaacaggacaacttgtttgacgttcgccatgaa
gaacaatcccagaaaagaaaaaggaatcaggaggatctcggaaagcggaaaaagttcaag
gcagacagaaaagctggtgctaaagacaatactatgaatattgaaccactcacaattgag
cacctttgtgaggggatgctgctgcttggttgtatcaaagaggtcagtgactttgagctc
gtcatcagcttgcccaatggacttacaggatttgtgccagtcacacagatcagcgatgcc
tacagcaaaatgctgagcaagcaggtggcccaaggggaagtcctggaggacttgcattct
ctcttggacatgtattctccagggatgctggtcagatgcattgtgaccagtgttgagaaa
agtgctgatggacgtcggagcatcaagttgtcaatcaaccccaaaaatgtcaataggggt
ctgaatgcttcagcactaacatcaggcatgctgctctctggctttgtgtctagtgcagaa
gaccatggctacctcattgatattggagtcaatgggactcatgcttttctgcctcgtcag
aaagcccaaaattacatcaaagcagtcaagagagggcctgacttgaaaataggtcagaac
ctgaactgtgtcatcgagcaagtaaagaatgagggaagaattgtccgtttgtctgttgat
cgatcagaggttgctgcatcccttgcaacagagcaacagaactggacgctctctaattta
ctgccagggctggtggtgaaagctaaagtgcagaaggtagatccactggggatcagtctg
acctttctgtcttccttcactggcattgtggatttcatgcacgtggacccagataaatcc
ataaactattctccaaatcaagtggtgaaagcctgtatcctctctgttcatcccacctcc
aaggtggtgcggctcactctgcggcagtcgttcctcaatcctggaggatccccaaaccaa
ctctccaatgatcgcattggggcagtggtggaggagtcaacggtgaaggctttctacaag
cagtttggtgccatctttgagcttgatgatggcactcatgcatttgcacggttgaaacat
ctgtcgaaaaacagaaaatcctttaaacctgcagcatttaaggcaggatgtaaacataaa
tgtcgtatcattgactacagcctgatggacgagatgtgtattttatctctgaagtatcaa
gttattggagctcgttttctgcagtaccaggatattcacacaggggatgtggtgcagggc
agagtgttggctctgaaacctattgggatgcaggtgaaagtgactgatggaattaaaggg
cttgtgccatccttgcatcttgctgatgtaatcctgaagcagcctgagaagaagtacaac
gtaggagacgaagtcaagtgtcgggtgctagagtgcaatcctgcagaaaagaagctattc
cttactctaaagaaaactcttattcaatcaaaacttccaatcctctccaaatatgaagat
gcagaaccaggtctgatcacacatggctttgtggtgtgtgcaagggaatttggctgcatt
gtgaagttctacaacgatgtcaaaggtttggtaccaaagaatgagttgagcgcagagccc
atatcttgtcctgataaagtcttccaggaaggccaggttgttaaagtaatggttttaaag
tgtgagcccgagcaggaaaggctcttgctgtccttcaagttgtcaagtacgtctgcacct
gagggcaaaagtgaacatactccaaagaagaaacaggaagtgaaatatcaaataggagag
atggttgatgtgaaagtcttgaagaagaaagagaatgggctagaggtttctatcttagaa
gatgaaggcaatgtgatagcctctcttcccacagtgtacctctctgactttgttgctaac
tgcaagctcctgtggcattgtcttcaagagggagatgtcttgcccagagttatgtgccta
agtgacaagggggaccgtattatcttgtgcaggaagtctgcggtgatttctgctgtacag
gaggagcaagttgtgagaaatttctctgaaatccagcctgggatgctgttgactggttac
gtgaggaatgttatgcactttggagtgtttgtggagttcccttttggtgtgacaggactg
gcacccaaagtgagcatgagtgacaagtttgtgacagacaccaaggaccactttgtggtg
ggacagactgtgattgcgaaggtgatgagcactgatgaggagaagcagcgtgtgctcctt
aatctgaaggtgtcagagtgcagctcaggcaatccagctgcagagagcttttccctactg
aatcaatatttcaaggaggtgaaggaaatcaggaacttattgaaaagaagagagtctggc
atagcccgaagtctttgtgaattgatgcccgggaaggagctgcagctggttgtgcaggat
gtgaaggaggatggctcagcactgttcagtggcagctgtgtgaaaggcttgactgtaaca
gccactcgttatcatttgggagataaaagtattgctcctggtgagaagacaaagggattg
gttcttcatgtggatgtcctcacatccaaggtttatgtttctcttcgagaagaactgtta
aagcaaagacccaagcaacaactcaaagagaactcccagcactctgccattgtgcagcac
atagcagaagagtttgccatcgtgtctctggaaacaggccagctggcagctatccccata
gcctctcacttcaatgataccttccgctttgactcagaaaaactgaaggtgggacagaca
atctatgcaaccctaaaaatggtgaaggtgaatgaccatggagttgtgttagcagtacaa
gacccagcaaagaagaatgtttttgtaagggtccggaaagaatccgagacaactttagaa
gagatgcttgctgctgctgtgacacactctctttctgtgggggatatcgtcactggtact
gttaaatctgtcaaaccaacccatgtcacagttgctattgatgacaagttgacaggttca
atccatgcatcccggattctggatgaagtgcccatagactcttttccaacacacactctg
aaagctggacagaaggtgactgcccgggtcattggaggcagagatgtgaatactcacagg
tatctgcccatcacccatccacacttcacacggtctattccggagctcagcattcgacca
agtgaaatagaagggaaagctgaaacattgaaagatggcaccctcaagaaacctgaactc
tacaatgttggacagacagtcacctgttttgtgaagaagtacaatgtcctcaaaaattgg
ctggaggtagaagtctcccctgatattcgaggaagagtccctcatctgatgctgtctccg
agcaccaaggtcttaaaacatccagaaaagaacttcaaaaatggacaagctttgtctgct
acagtgactggaacgggtgtcactgagacaaacctcttcttgtcactcataggaattccg
tcactgcagcagggtaccatcactgtaggtgtgatagcaaagatgattcctcacgttggt
ttgaccatcacgcttccaggtgggaagactggcaaagtcagtatctttcacctgagtgat
aagtacacagagaatcctctgagtgacttcaaagttggcaaggttgtcaggtgttacatc
ctcgccaacgagaatggcaaaatccagttatctcttcggcaatccaggctaaacccaagg
aacagcagcaaagtggaggatcctgaaataatgtctactaaagatgttaagaaaggccag
ctagtaagaggctacgtcaaatcagtcactccatcaggtgtattctttggcttgtctgca
tctcttcagggccgaatcctgttccagaatgtttccatttactatgtacagaaacactcc
ttatatgagaaatacctgcctgaaggaaagtttctcactgccaaggtccttggtgtaaat
aaaaaagaaaatcacattgagctgtctctcctgcctgaagacactgggatgccaagtgtc
ttgcctgaatccctgggcttgccacgctatagtgcagaggaagagaaaagagaagaagag
aaaagagaagaagacaaggaaaaaaaagaagagcataaactgaagacaaaacggaggaga
aagagttctgaaattgagcaggaggcaaagccaaaaaaaaggaaggtctgtccaacagat
gaaaatgacagtggaattgaggtatattaccgggaagaggaggatggtgaccaggaggaa
gaggcagctgaaaataaatctaagttaaggaaacgtggtgaagctcccaggctgcaggta
tccacaggcttcacctgggatgaggacatgaaagcggtggatatggctgtactgaatcag
aaggaagaaagctcagagagcgaggaggaggaggagaatccacagtctaagccgaagaaa
caaacaaagaaggagaaggagctggagaagcagaaaaaggagaaagagctttgcaaatta
gaggcagctctgatggatcctagtcgtcagccccagtcagcagatgattttgaccgcctg
gtgctgagcagtcccgatagctccatcctctggctgcagtacatggctttccacctccag
gctactgagattgagaaggccagagctgtggcagagagagcgcttaaaacaatttgcttc
agggaagaacaagagaagctgaacgtctgggttgctctgctgaacttggagaacatgtat
ggtactgaggagacactgatgaaggtctttgagagagctgttcaatacaatgagcctctg
aaagtcttccagcatttgtgtgacatctatgccaattctgagaagtacaagcaagcagaa
gaattgtaccacacaatgctaaggcgtttccgtcaggagaaatcagtgtggctgaaatac
gcctctttcctcctgaagcaaggccagactgaggctacacacaggcttttggagcgtgct
ctcaaggctctgcccactaaagaacatgtggatgttatttcaaggtttgcacaactggag
ttccgttttggggacacagaacatgccaaagccctcttcgatagcaccctcaacagctac
cccaagcggacagacatctggtctatctacatggacatcatgatcaaacatggcagccag
aaggaagtgcgggacatctttgagaaggtcatacacctgaacctggcaccaaagaagatg
aaattcttctttaaacgctacctggattatgagaagaaatacggcacagaagaaactatc
ttggctgttaaaacagctgcactagaatatgtagaggcaaagagttcccttgctgacgcc
taa
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