KEGG   Anas platyrhynchos (mallard): 119713656
Entry
119713656         CDS       T02816                                 
Symbol
HDAC1
Name
(RefSeq) histone deacetylase 1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
apla  Anas platyrhynchos (mallard)
Pathway
apla03082  ATP-dependent chromatin remodeling
apla03083  Polycomb repressive complex
apla04110  Cell cycle
apla04330  Notch signaling pathway
apla04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:apla00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    119713656 (HDAC1)
   03083 Polycomb repressive complex
    119713656 (HDAC1)
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    119713656 (HDAC1)
   04350 TGF-beta signaling pathway
    119713656 (HDAC1)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    119713656 (HDAC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:apla03036]
    119713656 (HDAC1)
Enzymes [BR:apla01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     119713656 (HDAC1)
Chromosome and associated proteins [BR:apla03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     119713656 (HDAC1)
   HDAC complexes
    Sin3A-HDAC complex
     119713656 (HDAC1)
    BRAF-HDAC complex
     119713656 (HDAC1)
    REST complex
     119713656 (HDAC1)
    SHIP complex
     119713656 (HDAC1)
    MiDAC complex
     119713656 (HDAC1)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     119713656 (HDAC1)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    119713656 (HDAC1)
  Chromatin remodeling factors
   NuRD complex
    119713656 (HDAC1)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 119713656
NCBI-ProteinID: XP_038023310
LinkDB
Position
24:1072745..1086539
AA seq 480 aa
MALTQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVAS
AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPVISKVMETFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG
GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQPIPEDAVQEDSGDEEEEDPEKRISIRNSDKRISCDEEF
SDSEDEGEGGRKNVANFKKAKRVKTEEEKEEEEKKEEKEEEKAKEEKPEPKGVKEETKST
NT seq 1443 nt   +upstreamnt  +downstreamnt
atggcgctgacgcagggcaccaagcggaaagtctgctactactacgacggtgatgttggg
aactattattatggccaagggcatccgatgaagccccacaggatccggatgacccacaac
ctgctgctgaactacggcctctacaggaagatggagatctatcgccctcacaaggcaaac
gcagaagaaatgaccaagtaccacagcgacgactacatcaagttcctgaggtctatccgc
cccgataacatgtctgagtacagcaagcagatgcagagattcaacgttggggaggactgc
cccgtgttcgatgggttgtttgagttttgtcagctctctgctggaggctctgttgccagt
gctgtgaagctgaacaagcagcagacagacatcgctgtgaattgggcagggggccttcac
cacgctaagaagtcggaggcttctggcttctgctacgtcaacgatattgtcctagccatc
ctggagctcctcaagtatcaccagagagtgctgtacattgacattgatattcaccatggg
gatggcgtggaggaagccttctataccacagaccgtgtgatgaccgtgtccttccataag
tacggagaatacttcccaggaacaggggacctacgggacattggtgcaggcaaaggcaag
tactatgctgtcaactaccccctccgtgatggaattgatgatgagtcctatgaggcgata
ttcaagccggtgatatctaaagtgatggagacgttccagcctagcgcagttgtcttgcag
tgcgggtcagattctctgtcaggagacaggctgggctgttttaatctgaccatcaaaggt
catgccaagtgtgtggagtttgtaaaaagttttaatttgcctatgctgatgctgggagga
ggaggctatacgatccgcaacgtggctagatgctggacctacgaaactgctgtggctttg
gacactgaaatcccaaacgaacttccatataacgactattttgagtactttggacctgac
tttaagctgcacatcagtccctccaacatgactaaccagaataccaacgagtatctcgag
aagatcaagcaacgtctctttgagaatctgcgcatgctgcctcatgcccctggtgtccag
atgcagccaattcccgaagatgctgttcaggaagacagtggagatgaagaggaagaagat
cctgagaaacgcatttcaatccgcaattctgataagagaatatcgtgtgatgaagaattc
tctgactctgaagatgaaggggaaggagggcgcaaaaacgttgccaactttaagaaagcg
aagcgtgtgaaaacagaagaggaaaaggaggaagaggaaaagaaagaggaaaaagaagag
gaaaaagcaaaagaggaaaaaccagaacccaaaggggtgaaggaagagacaaaatctacc
taa

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