Anas platyrhynchos (mallard): 119714063
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Entry
119714063 CDS
T02816
Symbol
COL1A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla04510
Focal adhesion
apla04512
ECM-receptor interaction
apla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119714063 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119714063 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119714063 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
apla00536
]
119714063 (COL1A1)
Glycosaminoglycan binding proteins [BR:
apla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119714063 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
119714063
NCBI-ProteinID:
XP_038024652
LinkDB
All DBs
Position
28:2038505..2053679
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AA seq
1453 aa
AA seq
DB search
MFSFVDSRLLLLIAATVLLTRGQGEEDIQTGSCVQDGLTYNDKDVWKPEPCQICVCDSGN
ILCDEVICEDTSDCPNAEIPFGECCPICPDTDASPVYPESAGVEGPKGDTGPKGDRGLPG
PPGRDGIPGQPGLPGPPGPPGPPGLGGNFAPQMSYGYDEKSGGMAVPGPMGPAGPRGLPG
PPGAPGPQGFQGPPGEPGEPGASGPMGPRGPAGPPGKNGDDGEAGKPGRPGERGPPGPQG
ARGLPGTAGLPGMKGHRGFSGLDGAKGEPGPAGPKGEPGSPGENGAPGQMGPRGLPGERG
RPGPSGPAGARGNDGAPGAAGPPGPTGPAGPPGFPGAAGAKGETGPQGARGSEGPQGARG
EPGPPGPAGAAGPAGNPGADGQPGAKGATGAPGIAGAPGFPGARGPSGPQGPSGAPGPKG
NSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPAGLPGPAGERGAPG
SRGFPGADGIAGPKGPPGERGSPGPVGPKGSPGEAGRPGEPGLPGAKGLTGSPGSPGPDG
KTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKPGERGAPGPPGAVGAAG
KDGEAGAQGPPGPTGPAGERGEQGPAGAPGFQGLPGPAGPPGEAGKPGEQGVPGDAGAPG
PAGARGERGFPGERGVQGPPGPQGPRGANGAPGNDGAKGDAGAPGAPGNQGPPGLQGMPG
ERGAAGLPGAKGDRGDPGPKGADGAPGKDGLRGLTGPIGPPGPAGAPGDKGEAGPPGPAG
PTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGETGDAGAKGDAGPPGPAGPTGAPG
PAGAVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNIGLPGPPGPSGKEGGKGPRG
ETGPAGRPGEPGPAGPPGPPGEKGSPGADGPIGAPGTPGPQGIAGQRGVVGLPGQRGERG
FPGLPGPSGEPGKQGPSGSPGERGPPGPMGPPGLAGPPGEAGREGAPGAEGAPGRDGAAG
PKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAGPPGPAGARGPAGPQG
PRGDKGETGEQGDRGMKGHRGFSGLQGPPGPPGAPGEQGPSGASGPAGPRGPPGSAGAAG
KDGLNGLPGPIGPPGPRGRTGDVGPVGPPGPPGPPGPPGPPSGGFDFSFLPQPPQEKAHD
GGRYYRADDANVMRDRDLEVDTTLKSLSQQIENIRSPEGTRKNPARTCRDLKMCHGDWKS
GEYWIDPNQGCNLDAIKVYCNMETGETCVYPTQATIAQKNWYLSKNPKEKKHVWFGETMS
DGFQFEYGGEGSNPADVAIQLTFLRLMSTEAAQNITYHCKNSVAYMDQDTGNLKKALLLQ
GANEIEIRAEGNSRFTYGVTEDGCTSHTGAWGKTVIEYKTTKTSRLPIIDLAPMDVGAPD
QEFGIDIGPVCFL
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattctcggttactgctgttgatagcagcgactgtactactcacc
cgcgggcaaggagaagaggacatccagactggaagctgcgtacaggatgggctcacgtac
aacgacaaggatgtgtggaaacctgagccctgccagatctgtgtctgcgacagcggcaac
atcctctgcgacgaggtgatctgcgaggacacctccgactgccccaacgctgagatcccc
ttcggagagtgctgccccatctgtcccgacaccgacgcctccccagtctacccagaaagc
gctggagtagagggtcctaagggagacaccggccccaaaggagacaggggactccccggc
ccccctggcagagatggcatccctggacagcctggcctcccgggacccccaggccctcca
ggacctccaggcctcggcggaaacttcgctcctcaaatgtcctacggctacgatgagaaa
tccggtggcatggctgtgcccggccccatgggtccagctggtccccgcggtctccctggc
cctcctggtgctcccggtcctcaaggtttccaaggtccccccggtgaacccggagagccc
ggtgcctctggtcccatgggcccccgtggtccagctggcccccccggcaagaacggcgat
gatggtgaagctggcaagcctggccgtcccggggagcgtggcccccccggcccccagggt
gcccgtggtctgccaggaaccgccggcctgccgggcatgaagggacacagaggtttcagc
ggtctggatggtgccaagggtgagcctggtcctgctggccccaagggcgagcctggcagc
cccggtgagaatggtgctcctgggcagatgggtcctcgagggcttcccggcgagagaggc
cgccccggtccctccggccccgctggtgctcgcggtaacgacggtgctcccggtgctgct
ggtcctcccggtccaactggtcccgccggcccccccggcttccccggtgctgctggtgct
aagggtgaaaccggtccccaaggtgctcgtggcagcgaaggtcctcagggtgctcgtggt
gagcccggtccccccggccccgctggcgctgctggtcctgctggcaaccccggtgctgac
ggtcaacctggtgccaagggtgcaaccggtgcccccggcatcgctggcgctcccggcttc
cccggtgcccgcggtccctccggaccccagggtcccagcggtgcccccggtcccaagggt
aacagcggcgaacccggtgccccaggcaacaagggagacaccggtgccaaaggcgaaccc
ggtcctgctggtgtccaaggcccccccggccccgctggtgaggaaggcaagagaggagcc
cgtggtgagcccggccccgctgggcttcccggtcccgctggtgaaagaggtgctcccggc
agccgtggcttccctggtgctgatggcatcgctggtcccaagggtccccccggcgagcgc
ggctcccccggccccgttggccccaagggctctcccggtgaagctggccgccccggtgaa
cccggtctccccggtgccaagggtctgactgggagccctggcagccctggtcctgatggc
aagactggtccccccggccccgctggtcaagacggtcgccccggccccccaggcccaccc
ggagccagaggccaagccggcgtgatgggtttccctggtcccaaaggtgctgcgggtgag
cctggcaaacccggtgagagaggtgctcccggcccccctggcgctgtcggtgctgctggc
aaagacggtgaagctggtgcccaaggtccccccggccctactggtcccgctggagaaaga
ggtgaacaaggtcctgctggtgcccccggcttccagggtctgccaggccccgctggcccc
cctggtgaggctggcaagcccggtgagcagggtgtccccggagatgctggtgcccccggt
cctgctggtgccagaggcgagagaggtttccctggtgaacgcggtgtccaaggcccccct
ggtccccagggtcctcgtggtgctaatggtgctcccggtaacgatggtgctaagggtgat
gctggtgctcccggtgcccccggaaaccaagggccccccggtctgcaggggatgcccgga
gaacgtggtgctgccggcctgccaggcgccaagggtgacagaggcgaccccggtcccaaa
ggtgctgatggcgctcctggcaaagacggtctccgaggcttgactggccccattggcccc
cccggccccgctggtgctcctggtgacaagggtgaagccggtccccccggtcctgctggt
cccactggtgcccgtggtgctcccggtgaccgcggcgagcccggcccccccggtcctgct
ggatttgctggcccccccggtgccgatggccagcctggtgctaaaggcgaaactggcgat
gctggagccaagggtgacgctggcccccccggccccgctggccccactggtgctcctggc
cctgccggtgctgttggtgctcccggtcccaaaggtgctcgcggtagcgctggaccccct
ggtgctactggtttccctggtgctgctggaagagttggaccccccggcccctctggtaac
atcggcctccccggcccccccggccccagcggcaaggaaggtggcaaaggaccccgcggt
gagactggccccgctggccgccccggtgagcccggacctgccggcccccccggaccccct
ggtgaaaaaggctcccccggcgctgacggccccattggcgctcctggcacccccggaccc
caaggtatcgctggccaacgcggtgttgtcggcctccccggacagagaggcgagagaggc
ttccctgggctgcccggcccctctggcgaacccggcaagcaaggtccctctggttctcct
ggcgagcgcggtcctcccggccccatgggcccccccggcctggctggcccccctggcgaa
gctggacgtgagggtgctcccggtgccgaaggtgcccccggtcgcgatggtgctgctggt
cccaagggtgaccgtggtgagaccggccccgctggcccccctggtgctcccggtgccccc
ggtgcccctggccccgtcggtcctgctggcaagaacggagatcgcggtgagaccggtccc
gctggtcccgctggcccccctggtcccgctggtgctcgtggtcctgctggtccccaaggt
ccccgtggtgacaaaggtgaaactggcgagcagggtgacagaggcatgaagggtcaccga
ggcttctccggtctccagggcccacccggtcctcctggcgctcctggtgaacaaggtcct
tctggtgcttctggtcctgctggtccacgaggtcctcctggctccgctggtgccgccggc
aaagacggtctcaacgggctgcccggccccatcggtccccccggcccccgcggtcgcacc
ggcgacgtcggccctgttggtccccccggcccacctggccccccaggtcctcctggcccc
cccagcggcggcttcgacttcagcttcctgccccagcccccccaggagaaggctcacgac
ggcgggcgctactaccgagccgacgacgccaacgtgatgcgcgaccgcgacctggaggtg
gacaccaccctcaagagcctgagccagcagatcgagaacatccgcagccccgagggcacc
cgcaagaacccagcccggacctgccgcgacctcaagatgtgccacggcgactggaagagc
ggcgagtactggatcgaccccaaccaaggctgcaacctggacgccatcaaggtctactgc
aacatggagacgggcgagacctgcgtctacccaacccaggccaccatcgcccagaagaac
tggtacctcagcaagaaccccaaggagaagaaacacgtctggttcggcgagacgatgagc
gacggcttccagttcgagtacggcggcgagggctccaacccggccgacgtggccatccag
ctgaccttcctccgcctgatgtccaccgaggctgcccaaaacatcacctaccactgcaag
aacagcgtcgcctacatggaccaggacacgggcaacctgaagaaggccctgctcctccag
ggcgccaacgaaatcgagatcagggccgagggcaacagccgcttcacctacggcgtcacc
gaggacggctgcacgagtcacaccggcgcttggggcaagacagtcatcgagtacaagacg
acaaagacgtcccgcctgcccatcatcgacttggcccccatggacgttggagctccggac
caggaattcggcatcgacatcggccccgtctgcttcttgtaa
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