Anas platyrhynchos (mallard): 119717123
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Entry
119717123 CDS
T02816
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119717123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apla03021
]
119717123
03019 Messenger RNA biogenesis [BR:
apla03019
]
119717123
Transcription machinery [BR:
apla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119717123
Messenger RNA biogenesis [BR:
apla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119717123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DUF6980
Motif
Other DBs
NCBI-GeneID:
119717123
NCBI-ProteinID:
XP_038035947
LinkDB
All DBs
Position
1:201084015..201097168
Genome browser
AA seq
1546 aa
AA seq
DB search
MIKRGASIDEVDLVHEFTPLHCAAHSGSLEDTSAVTSGASTPPAVPEIQKNLTQEQLIRQ
QLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQGSSTIASVPAPSKPHVSQTPHMTV
KPPHQTSVQSEKIKPSPSPPLHDIKIVNRDPRLNRMAQHSSHAKDQSHRKEFPPNTTSQS
DTKASKTSQAEKQNSTKQEKLKAGEKIQKKELDQSEAKSKSPSPLKNKLPSTKDTKNQES
ESTKVSEISKRDPRLKRHLQEKPEGKEDEVKEKRRNVEKKEKEEHKTCEHRPVGSRNKVV
NGVVQKQDTPTEESEKQGGKQGRSSNRKRSRSRSPKSRSPSTHSPKRRERRSPKRRLRSL
SPTSSTPKIGKIRQIGPKQSHVEEPTQAARDERNSNKRNVKQEVRDPRRVKKAQEDRPQE
TASQHSTKASPDPKENAENWQGSKAGKRWKSGWEENKNSQQSEEHQALGKAPHQRHRENW
TAAKGILSPRAPKQQHRLSVDANLQIPKELTSASKRELLKKANDRLASGEITQDEFLMVA
HQIRQLFQYQEGKHRCNVWDSPTEEKCVLKKKPLLSDAELTYYEHKAKLKRTQVQHSLSR
LDLLDPDDILDYHLPDALLSGIECEQAKAKRGVQFDRKEPFGERSRRHSPVSGTNRPFPD
NLSPLESRRRLEEQNATKGARGSKTFDPYDSWGESEEFRDALRQQGKGTPEFQKIDGDAI
CRFDNREERQLLGQAGVREEPRSPFSERFKRARYEDLEKAPFPESPVARFGGIEAKQRIS
ALMEDRPLFDGSPRQPPARVGVDGPGSPFGDGPAAGSASRIDGPPGQAALRFEGPLVGAG
ASQFDGPLAGAGGAGALRFEGPPGQLAGALRFEGPPGQVGGGGPLRFEGPLGPLRFEGPA
GQPVGGPRFEGPGVGLRFDGPRGQPSGGLRFEGPHGQPLGPRGQPGGGLRFEGPHGQPLG
PHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFEGPHGQPMGPHGPSGGGLRFEGPHGPPGV
GPRLIDGPVHQGAGGLRFDGPLGRTGPRFDGCHAGFDGQPGQLSLLQRFDGIHGQPGPRF
ERAPGQQGQARFDTAIPQRFDGPHQPASRFDLLLGLQGARFENVANHPASRLEMSPYGQG
GSFVDHPSQGYNGPSHGMQFQRPDIFDGSPGPNFNGPAGPGAQNFSLRASGHYFDEKNLQ
GPQYGGFNSMAVGSNQVSLMSAQLGPYGQGQQYLPNPGSFVQNPAGGLPHSYPDNHLGQL
DVNELFAKLLSTGILKLSKTDSTSAQVNETSAQPAAEEEDDDQSDQDVPDLTNFAVEELR
QRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYS
LTDWIEFEEIADLEERAKRRFFEKAHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEVCQ
EQFEQYWDEEEEEWHLKNAIRVDEKIYHPSCYEDYQNTSSFDCTPSPSKNPVESPLNIML
NIVKQETQESCDSPKVKEEPDDTPPACAEESTPASTDIKTEPDESV
NT seq
4641 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagaggagctagtattgacgaggtggatttagtccacgagttcacacctttg
cactgtgctgcacactctggaagtctggaggacacctctgctgtcacttctggtgcctct
actcctccagctgttcctgaaatacagaagaatttgacacaagagcaactgataaggcag
caattgcttgcaaagcaaaaacagttgttagaacttcagcaaaaaaaattagagctggag
ctggaacagactaaagcacagttggctgtttctcttagcgttcaacaaggatcatctact
atagcttcagttccagcaccttccaagccacatgtgtctcagacacctcatatgacagtt
aaaccacctcatcagacttctgtgcaatccgaaaaaatcaaaccatccccaagtcctcca
cttcatgatatcaaaatagtaaatagggatcctcgacttaataggatggctcaacattct
tctcatgctaaagatcaatctcataggaaagaatttccaccaaacacaaccagtcagtct
gataccaaggcaagcaaaacatcacaggctgaaaaacaaaactccacaaagcaagagaaa
ttgaaagcaggtgaaaaaatacagaagaaagagcttgatcagtcagaagcaaaatctaaa
tcaccatctcctttgaaaaacaagttacccagtactaaagatactaaaaaccaggaaagt
gaaagcacaaaagtatctgaaatcagtaaacgggatccaagactgaaaagacatcttcag
gaaaagccagagggcaaggaggatgaggtgaaagagaagaggagaaatgtagagaaaaaa
gaaaaagaggaacataagacatgtgaacatagaccagtaggcagcagaaataaagtagtt
aatggtgttgttcagaaacaagacacacctacagaagaatcagaaaaacagggtggaaaa
caagggagatcaagtaacagaaaacggtcacggtcacgctctcctaagtcacggtcacca
tctacacattctccaaaaagaagagagaggagatcacccaaaagaagactcagaagctta
tctcccacttcgtcaactcctaaaatcggaaagatacgtcagataggtcctaagcagtct
catgttgaagaacccacacaggcagcaagagatgaaagaaattctaataagcggaacgtg
aaacaagaggtgcgagatccacggagagtgaaaaaagcccaagaagacaggcctcaagaa
acagcaagtcagcattctacaaaagcttctcccgatccaaaggagaatgcagaaaactgg
cagggatccaaagcaggcaagaggtggaaatctggttgggaagaaaacaaaaactcgcag
cagagtgaagagcaccaagcacttggtaaagctcctcaccaaagacaccgggaaaactgg
actgctgctaaaggaattttatcaccccgagcaccaaagcagcagcacaggttaagtgtg
gatgccaatttacaaattcccaaagaattgacatctgcaagcaagagagaattacttaaa
aaggccaatgatcgcttagcatctggtgaaataactcaagatgaattcctcatggtagct
catcagattcgacagctgttccagtaccaggaagggaagcacagatgtaatgtgtgggat
agccctacagaggagaaatgtgttttgaaaaagaaacctcttctatctgatgcagaatta
acatactacgaacacaaagctaaattaaaaagaacccaagttcagcattcattatcaagg
cttgatctgttggatcccgatgatattttggattatcatttacctgatgcgttgctttct
ggaatagaatgtgagcaagcaaaagcaaagcgtggagtacagtttgacagaaaagagcca
tttggagaaagatctaggaggcattctcctgtaagtggcactaacagaccttttcctgat
aacctttcaccgcttgagagtcgacgaagacttgaggaacaaaatgctactaaaggagca
agaggttctaaaacattcgatccttatgacagctggggagaatcagaggaatttagagat
gctctcagacaacagggaaaaggcacaccggagttccagaaaatagatggtgatgcaatc
tgcagatttgataatcgtgaagaaagacagcttctcgggcaagctggtgttcgagaggaa
ccaagatcgccattcagtgagcgtttcaaaagagctagatatgaagatctggagaaagca
ccatttccagaaagtccagtagcaagatttggaggcattgaagccaagcagagaataagt
gcgctaatggaagacagacctctattcgatggctcacctagacaacctcctgcaagggtt
ggggtagatggaccgggaagtccttttggtgatggtcctgctgctggttcagcttctcga
attgatgggccacctggacaggctgctctgagatttgaggggccgttggtcggagcaggt
gcatcacagttcgatggaccgctggcgggggcagggggagcaggagccctgagatttgag
gggccaccagggcagctggcaggggcactcagatttgaaggacccccaggacaggttgga
ggaggaggtccactgaggtttgagggccctcttggccctttgcgctttgagggtcctgca
ggccagcctgtaggtggtcctagatttgaaggacctggagttggtctcaggtttgacgga
ccccgtggtcagccttcaggtggtctcaggtttgagggaccccatggtcaacctctgggg
cctcgaggtcaaccagggggtggtctcaggtttgagggaccccatggtcagcccttgggg
cctcatggtcaaccagggggtggtctcaggtttgaggggccacatttacagcccttgggg
ccccatggtcaacctggaggtggcctcagatttgaggggccacatgggcagcctatgggg
ccacatggaccatcagggggtgggctcaggtttgaggggccacatggacctccaggtgta
ggtcctaggttgattgacggaccagtacaccagggagctggtggacttagatttgatggt
cctctgggacggacgggtccaagattcgatggctgtcatgctggatttgatggtcagcct
ggacagctatctcttttgcaaagatttgacggaattcatggacagcctggcccaagattt
gaaagggcacctggccagcagggacaggcacgattcgatacagccatacctcaaagattt
gatggtcctcaccagccagcctcaaggtttgacctgctccttggccttcaaggtgcacgg
ttcgaaaatgtagctaaccatcctgcctcaagattagaaatgtcgccatatggacaaggt
ggttcgttcgttgatcatcccagccagggctacaatggaccatctcatgggatgcagttc
cagaggcctgacatatttgatggttcgccaggaccaaatttcaatgggccagctggccca
ggagcacagaatttctcattgagagcatctggacattattttgacgaaaaaaaccttcag
ggtcctcagtatggaggcttcaatagtatggcagtgggaagtaatcaggtttcgctcatg
tctgctcagctaggaccgtatggccaaggtcagcagtatttgccaaatcctggaagcttt
gttcagaaccctgcaggaggccttccacattcatatcctgataaccaccttggccagctt
gatgtcaatgaattgtttgctaaactgttgtcaacaggaattctcaaactgtcaaaaact
gattccacttcagcacaagtgaatgaaacatcagcccagccagctgctgaagaggaggat
gatgaccagagtgatcaagatgtcccagacctcacaaactttgcagttgaagaactcaga
cagcgttatgatagtgttattaatcgactatacactggaattcagtgttactcgtgtgga
atgagatttactacttcacagacagatgtttatgccgatcatttagattggcattatcgc
cagaaccgcacagaaaaagatgttagcagaaaaattacacacagaaggtggtactacagt
ttaacagattggattgaatttgaagaaatagctgatctagaggaacgtgcaaaaagacga
ttttttgaaaaagcccatgaagaagttgtgctcaagacacaagaagctgcaaaagagaaa
gagtttcagagtgtccctgctggaccagctggagcagttgaaagctgtgaagtttgccaa
gagcaatttgaacaatactgggacgaggaagaggaagagtggcacctaaagaatgctata
cgagtagatgaaaagatttaccatccatcttgttatgaagactaccaaaatacatcatca
tttgattgcacaccatctcccagcaagaatcctgtagaaagtcctctaaatattatgttg
aacattgttaaacaagaaacacaagagtcctgtgactcgcctaaagtcaaagaagaacct
gatgacacccctcctgcctgtgcagaagagagcacacctgcatctacagatattaaaaca
gaacctgatgagtctgtttaa
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integrated database retrieval system
