Anas platyrhynchos (mallard): 119717299
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Entry
119717299 CDS
T02816
Symbol
EXOSC1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119717299 (EXOSC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apla03019
]
119717299 (EXOSC1)
Messenger RNA biogenesis [BR:
apla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
119717299 (EXOSC1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
119717299 (EXOSC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
119717299
NCBI-ProteinID:
XP_038036938
EnsemblRapid:
ENSAPLG00030018142
LinkDB
All DBs
Position
6:23257063..23258398
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AA seq
195 aa
AA seq
DB search
MAAARRYCVPGERLCSAAEAAAGSGTYTRRGAVCAALAGCMRRGGGDGGGPQVAVLRDAE
AQLLPDVGAVVTCRVCSINSRFAKVHILYVGSTPLRSAFRGTIRREDIRATEKDKVEVYK
SFRPGDIVLAKVISLGDAQSNYLLSTAENELGVVVARSEAGVQMVPISWCEMQCPQTHTK
DFRKVARVQPQFLQT
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgcggcggtactgcgtgccgggggagcggctgtgcagcgcggccgaggcg
gcggcgggcagcggcacctacacgcggcgcggggccgtgtgcgcggcgctggccggctgc
atgcggaggggcggcggggacggcggggggccgcaggtggcggtgctgagggacgccgag
gcgcagctgctgcccgatgtgggcgccgtggtcacctgcagggtgtgcagcatcaactcg
cgcttcgccaaggtgcacatcctctacgtgggctccacgccgctccgctccgccttccgc
ggcaccatccggagggaagatatccgagccaccgagaaggataaggtggaggtgtacaag
agtttccgccccggtgacatcgtcctggccaaggtgatctccctgggggacgcgcagtcc
aactacctgctgagcacggcggagaacgagctgggcgtggtggtggctcgcagcgaggca
ggggtgcagatggtgcccatcagctggtgcgagatgcagtgcccccagacgcacaccaag
gatttccgcaaggtggcccgcgtgcagccccagttcctgcagacctag
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