KEGG   Anas platyrhynchos (mallard): 119717299
Entry
119717299         CDS       T02816                                 
Symbol
EXOSC1
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
apla  Anas platyrhynchos (mallard)
Pathway
apla03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:apla00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    119717299 (EXOSC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:apla03019]
    119717299 (EXOSC1)
Messenger RNA biogenesis [BR:apla03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     119717299 (EXOSC1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     119717299 (EXOSC1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 119717299
NCBI-ProteinID: XP_038036938
EnsemblRapid: ENSAPLG00030018142
LinkDB
Position
6:23257063..23258398
AA seq 195 aa
MAAARRYCVPGERLCSAAEAAAGSGTYTRRGAVCAALAGCMRRGGGDGGGPQVAVLRDAE
AQLLPDVGAVVTCRVCSINSRFAKVHILYVGSTPLRSAFRGTIRREDIRATEKDKVEVYK
SFRPGDIVLAKVISLGDAQSNYLLSTAENELGVVVARSEAGVQMVPISWCEMQCPQTHTK
DFRKVARVQPQFLQT
NT seq 588 nt   +upstreamnt  +downstreamnt
atggcggcggcgcggcggtactgcgtgccgggggagcggctgtgcagcgcggccgaggcg
gcggcgggcagcggcacctacacgcggcgcggggccgtgtgcgcggcgctggccggctgc
atgcggaggggcggcggggacggcggggggccgcaggtggcggtgctgagggacgccgag
gcgcagctgctgcccgatgtgggcgccgtggtcacctgcagggtgtgcagcatcaactcg
cgcttcgccaaggtgcacatcctctacgtgggctccacgccgctccgctccgccttccgc
ggcaccatccggagggaagatatccgagccaccgagaaggataaggtggaggtgtacaag
agtttccgccccggtgacatcgtcctggccaaggtgatctccctgggggacgcgcagtcc
aactacctgctgagcacggcggagaacgagctgggcgtggtggtggctcgcagcgaggca
ggggtgcagatggtgcccatcagctggtgcgagatgcagtgcccccagacgcacaccaag
gatttccgcaaggtggcccgcgtgcagccccagttcctgcagacctag

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