Acanthaster planci (crown-of-thorns starfish): 110975812
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Entry
110975812 CDS
T05078
Name
(RefSeq) helicase SKI2W-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
aplc
Acanthaster planci (crown-of-thorns starfish)
Pathway
aplc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aplc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110975812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aplc03019
]
110975812
Enzymes [BR:
aplc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110975812
Messenger RNA biogenesis [BR:
aplc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110975812
mRNA degradation factors
3'-5' decay
Ski complex
110975812
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
MTR4-like_stalk
ResIII
DEXQc_Suv3
DUF3516
ATPase_2
Motif
Other DBs
NCBI-GeneID:
110975812
NCBI-ProteinID:
XP_022084306
UniProt:
A0A8B7XWW4
LinkDB
All DBs
Position
Unknown
AA seq
1281 aa
AA seq
DB search
MADDEWADLENYRLDLTAKDGPDGLDFALLELGSTGQVTAVLRGDPKAGPAPLSTLPNGL
PPVLQDLKLKTLQFLDRPEKLPIHDVKTAQRFWPRTSDPCSLYEVRLCPVQTTLEMERHP
TTGELTGFREVKIEDTAATAKNSLSLRRQPGPPTQSVRGSSTNFPFWPGGMDEPSAEIIG
ARGEDEEEINFENDLLSTPPGLATGMTFESKPPAIIANKPDQPPPNETPPTAPASHILKL
TDLMIVDDGDEFAFSDKEEEGDLEEIDDAGVAGEGGDLKKEADELSKEAAENLEKMLPQE
MTVAKQRKEEKAEPTKEQWAVSVDVSTPVSDFHRRVPAPAKEWPFELDVFQKQAVIHLEN
HDCVFVAAHTSAGKTVVAEYAIALSLKHLTKTVYTSPIKALSNQKFRDFKETFSGDVGLL
TGDVQIKTDSSCLIMTTEILRSMLYSGSDIIRDLEWVIFDEVHYINDSERGVVWEEVLIM
LPAHVKIILLSATVPNTLEFADWVGRIKRRKIYVISTLKRPVPLEHYLYTGNSTKSSNEL
FMIVDSTKKFLTSGYHKAVDAKKERESKASASFGAKGPRQGPPKGDKGVYLSVVDMLRKR
DQLPVVAFTLSKKRCDENASMLTTLDLTTTNEKSQIHVFMQKCVERLKGSDRMLPQVLHM
RDLLKRGIGIHHSGILPILKEMIEMLFQRGLVKLLFATETFAMGVNMPARTVIFDSTRKF
DGTGMRTLLAGEYIQMAGRAGRRGLDTTGMVIVLCKGDVPESSELHKMMLGKPTQLESQF
RLTYTMILNLLCVEELRVEDMMKHSFSESSTRKDTKEYEAKLRAVQEEMGQVRELNCYLC
HEDLEQYYQTCKQLQKLRLGLRKMIASHPLGVKALSSGRVVVVCTKQNRNALGVILSSST
ASKERTFKTLVLCNQQDPGTGSSAVNPGNSFHVEPLRKEPLFQPEGPCGHTVLDLVGEQI
GTVTTLTIKIASDRIADDFKKRQMPRFRDNPPGQSTSIATQELLRITEANPDGLPSLDPV
KDLHLRELDQVEKFQEQATLESLLDQYGCLNCPNFLEHFGMMCHRMKLKEDFNHLRYLLS
DQSLHLLPEYHQRIQVLQHLRHIDTSHTIQLKGRVAREMSNHELILTELVFQSLLSGLPP
AEIAALLSCMVFQEKRCSEPELTPSLKEGVTKIKAEAKRLAKIQYECGMNLSTEDYVEQF
RFGLTQVVYEWARGMPFADITNLTDVSEGIIVRTIQRLDEVCRDVRSAARIVGDPSLFQK
MEEASQLIKRDIVFAASLYTQ
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgacgaatgggcggacttagagaattatcgtctcgatttgacagctaaggat
ggccccgatggactggactttgccctgttggaacttgggtcaacgggtcaggtgacagca
gtactgaggggtgaccccaaggccggtccagctccactgtccacgttgccgaatggcttg
ccaccagtgcttcaagacctgaagctgaagacgctccagttcctggacagaccagagaaa
ctccccatccatgatgtcaagacagctcagaggttttggccccgtacatctgacccatgc
agcctgtacgaggtacgattatgccccgtacagaccacactagagatggagagacatcca
actacgggggagctgaccggcttcagagaagttaagatagaggacacggccgccacggcc
aagaactccctctccctacgtcgccagccgggaccgcccacccaatcagtgcgtggcagc
tctacaaacttccccttctggccaggaggcatggatgagccatcagcggagatcatcggt
gctcgaggggaggacgaagaggagattaactttgagaacgatcttctctcgactcccccg
gggctagccactggcatgacattcgagagcaagccccctgccatcatcgcaaacaaaccc
gaccagccgccacccaacgaaactcctcccactgcaccggcatcccacatcctgaaactg
acggatctcatgatcgtcgacgatggcgatgaatttgccttctctgacaaggaggaggag
ggggacttggaagaaatcgatgatgcgggtgtggcaggggaaggcggggacttgaaaaaa
gaggcagatgaattgagcaaggaagcggcggagaatttagagaagatgttgccccaggag
atgacagttgccaagcaacggaaggaggagaaggcagagccaaccaaggagcagtgggca
gtcagtgtggatgtttccactccagtgagcgacttccaccgacgggtaccagctccagca
aaagagtggccgtttgagctggatgtctttcagaagcaggctgtcatccatttggagaac
cacgactgcgtattcgttgcagcccacacctcagccggtaaaacagtggtcgccgagtat
gctattgcactgtcgctcaagcatctcaccaaaaccgtctatacttcaccgatcaaggcc
ctgtccaatcagaagttccgggacttcaaggagaccttcagcggggacgtgggtcttctg
acgggagacgtccagatcaagacagattcctcatgcctgatcatgaccacggagatcctg
aggtcaatgctgtacagtggctccgatatcatacgggacttggagtgggtgattttcgac
gaggtccactatattaacgactcagagagaggcgtggtgtgggaggaggtcctgatcatg
ctacccgcccacgtgaaaattattctgctcagcgcgacggtgccaaatacgctggagttt
gccgattgggtcggacgaatcaaaaggagaaagatctatgtaattagcactttgaaacga
cctgtccctttggaacactatctctacacgggaaacagtaccaagtcaagcaacgagcta
ttcatgattgtagactccaccaagaaatttttgacttcaggataccacaaagccgttgat
gccaagaaggaacgggagagcaaggcatctgcttcgttcggagccaaaggccccaggcag
ggccccccgaaaggggataaaggtgtgtacctgtccgtggtggacatgctgcgcaagagg
gaccagctgcccgtggtggcgttcacactctccaagaagcgctgtgacgagaacgccagc
atgctgacgaccctcgacctcaccactaccaacgagaagagccagatccacgtcttcatg
cagaagtgcgtggagcggctgaaagggagtgaccgcatgctgcctcaggttcttcacatg
cgagatttgttgaagcgagggatcggcattcatcacagcgggattttacctatcctcaag
gagatgattgagatgcttttccaacgaggcttggtcaaactgctgtttgccacggagact
ttcgctatgggcgtcaacatgccggccaggacggtcatctttgactccactcgcaagttt
gatggcacgggcatgcggacacttctggctggggagtacatccagatggctggccgggca
ggccggcgtgggctggacaccacgggtatggtcatcgtactgtgcaaaggagatgtgccg
gaatcatcagagctgcacaagatgatgttgggcaagcccacccagctggagtcccagttc
cggctgacctacaccatgatcctcaacctcctctgtgtggaggagctgcgggtggaggac
atgatgaagcacagcttctccgagtccagcaccaggaaggacaccaaggagtacgaggcc
aagctgcgagcagtccaggaggagatgggtcaggtcagggagctgaactgctacctgtgc
catgaggacctggagcagtactaccagacctgcaagcaactgcagaagctgaggctagga
ctcaggaaaatgattgcatctcatccattgggagtgaaggccctctcctcgggacgagtc
gttgttgtttgcaccaagcagaatcgcaatgctctgggtgtcattctcagctcctcaaca
gccagcaaagagagaacattcaaaaccctagtcctgtgcaatcagcaagatcctggtacc
gggagctcagcagtgaatccaggcaacagttttcacgtggagcctctgcgcaaggagccc
ctgttccagccagaagggccctgcggtcacacggtgctagacctggtcggagagcaaatt
gggactgtcacaacactgaccataaagattgccagcgaccggatcgcagacgatttcaag
aagcggcagatgcccagattcagggacaatcccccgggacagtccaccagcatcgccacc
caggagctgctccggatcaccgaggccaaccctgacggtctgccctccctagatcccgtc
aaagacctgcacctgcgagagctggaccaagtggagaaattccaagagcaagccacccta
gaatctctcttggaccagtatggctgtctcaactgccccaacttcctggaacattttggt
atgatgtgtcaccgcatgaagctcaaggaggatttcaaccatctccgatacttactttct
gatcaaagcctgcatctactgccagagtaccatcaaaggatacaggtgctgcagcacctg
cgtcacatcgatacctcccacaccatccagctgaagggccgggtggcgcgggagatgagc
aaccatgagctgatcctgacggaactggtgttccagagcctgctgagtgggctgccgcca
gccgagattgccgctctgctgtcctgcatggtgttccaagagaaacgctgcagcgagccc
gagctgacgccgtccttgaaagagggagtgaccaagatcaaagcggaggcgaagcgtctc
gccaagatccagtacgagtgtggtatgaatctctccacagaggactacgttgagcagttc
cgcttcggcctgacccaagtggtgtacgaatgggctagaggaatgccgtttgccgatatc
accaacctgacggatgtctcagagggcatcatcgtacggaccatccagcgactggacgag
gtctgtcgcgatgtccgcagtgcggcccgcatcgtgggcgaccccagcctcttccagaag
atggaagaagcctcacagctgatcaagagagacattgtgtttgctgccagcctctacaca
cagtag
DBGET
integrated database retrieval system
