Acanthaster planci (crown-of-thorns starfish): 110976404
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Entry
110976404 CDS
T05078
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
aplc
Acanthaster planci (crown-of-thorns starfish)
Pathway
aplc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aplc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110976404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aplc03041
]
110976404
Enzymes [BR:
aplc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110976404
Spliceosome [BR:
aplc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110976404
Complex C
U4/U6.U5 tri-SnRNP related factors
110976404
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_N
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
Ebola_NP
AAA_30
ATPase
Flavi_DEAD
PWI
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
110976404
NCBI-ProteinID:
XP_022085325
UniProt:
A0A8B7XZ67
LinkDB
All DBs
Position
Unknown
AA seq
1046 aa
AA seq
DB search
MASKELSLWVRDSLHDLLGISDHYIADYLVGLAGKSSSGGDFIRRIQDTGTIDVNAAVNK
FAHRLWEKLPRKVSSKETNRAREREAIARTKQNQSYKLLSDDEDDLTVTRAVPTKRDNRE
KGSKRKHIRKKKEESSESDSDPQPVRTSKHAKREPTSGSESDEWDREERERRRDLEERDA
FAERLRNKDKERTKNVTDKGSKKAYEEAKKRLEMAEQDRRKQVPDLRKESRREYLKKREV
DKLEELEADIADEEYLFSSTELTSREKRDLEYKKTVLKLAQDHKSAGEKQKEGRYYIPKE
DEKPSDKYIEPVLEEAELGPRSEQQRWEEEHVKLGSMKFGAKDAKQKHKTREYDLVVDEL
GEIEFVSAMQMPGTRDRSEPEEPQISEAQKKRISIAETRKSLPIYRFRDDLLQAIHDHQV
LIIEGETGSGKTTQIPQYLYEAGYTKGEKKIGCTQPRRVAAMSVASRVAEEMNFKLGNEV
GYSIRFEDCTSDRTILKYMTDGMLLREFLSEPDMAGYSVLIIDEAHERTLHTDILFGLVK
DIARFRPDLKLLISSATLDTDKFAEFFDDAPIFRIPGRRFPVDLFYTKAPEADYLDACIV
SVLQIHVTQPMGDILVFLTGQEEIETCMEILQERVRKLGTKIRELIVLPIYSTLPSELQA
KIFEPTPPGSRKVVLATNIAETSLTIDGIIYVIDPGFNKQKSYNARTGMESLVVTPVSKA
SANQRAGRAGRVAAGKCFRLYTAWAYKNELEENTIPEIQRTNLGNVVLLLKSLGINDLIH
FDFMDPPPHETLVLALEQLYALGALNHKGELTKMGRRMAEFPVDPMLSKMILASEKYQCT
EEILSITAMLSVNNAIFYRPKDKIVHADNARVNFFAPGGDHLTLLNVYNQWVETDFSTQW
CYENFIQHRSMRRARDVRDQLRGLVERVEIALTSAPHDNITIRKAITAGFFYHTAKFSKG
GQYRTVKHQQTVMVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIENAWLLEVAPHYY
KAKELEDTSSRKMPKNTGKSREETRT
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atggccagcaaggagttgagcctgtgggtgcgagacagcttgcatgacctcctgggcatc
agtgaccactacatagcggactacctcgtgggcctggcgggcaagtccagcagcggtggg
gacttcatccggaggattcaagacacgggaactatcgacgtcaatgccgccgtcaacaag
tttgcgcacagactttgggagaagcttccccgcaaggtgtccagcaaggagacaaaccgt
gctcgcgagcgggaggccattgcgagaaccaaacagaaccagagctacaaactcctgtcg
gacgatgaagacgatctgaccgtgacgcgtgccgtgccgacgaagcgagataaccgggag
aagggaagcaagaggaagcacatccgaaagaagaaagaggagagcagcgagagtgacagc
gaccctcagcctgtcaggacgagcaaacacgcgaagcgggagcccacctcaggctcagag
tccgacgagtgggacagggaggagcgagagagaagacgtgacctggaggagagggatgca
tttgccgagcgcctccgaaacaaggacaaagagcgcaccaaaaacgtcaccgacaaagga
agcaagaaggcttacgaagaggccaagaagagactggagatggcagagcaggaccggcgg
aagcaggtccccgacctgcggaaagagtcacgccgtgaataccttaagaaacgagaggta
gacaaacttgaggagctggaggccgacatcgctgacgaggaatatctcttctcatcaact
gaattgacttccagagaaaagagagatctggaatacaagaagacagtgctgaagttggcc
caggatcacaagtcggccggggagaagcagaaagaaggcaggtactacatacccaaagag
gatgagaaaccctcagacaagtacatcgagcccgtgctggaagaggcggagcttgggccc
aggtccgaacagcaacgatgggaggaggaacacgtgaagttgggctccatgaaatttgga
gccaaggacgccaaacagaaacacaagactagggagtacgatctagtcgtggacgagttg
ggcgagattgagtttgtcagtgcaatgcagatgccaggaactcgcgacaggtcggagccc
gaggaaccccagatctccgaagcccagaagaaacgcatcagcatcgccgagactcgcaag
agcctacccatctaccggttccgggacgacctcctccaagctatccatgaccaccaggtg
ctaatcatcgaaggggagacgggatcgggaaagaccactcagataccacagtacctctat
gaagcgggctacacgaaaggtgaaaagaagatcggctgtacccagcccaggcgtgtggca
gccatgagcgtggctagcagagtagcggaagaaatgaacttcaaacttggaaatgaggtc
ggctacagcattcgttttgaggactgtacgtcagaccgaacgattttgaagtacatgacg
gatggtatgctgctgcgagaattcctgagtgagccagacatggcgggctacagcgtcttg
atcatcgacgaagcccacgagcgcaccctccacacagacatcctgtttggcctggtgaag
gacattgcccgcttccggcctgacctcaaacttctcatctccagcgccacgctggacact
gacaagtttgccgagttctttgatgacgccccgattttccgcatccccggtcgccggttc
ccagtagatttgttctacacaaaggcgccagaggctgactatttggacgcctgcatcgtc
tctgttcttcagattcacgtcacccagcccatgggggatatcctggttttcctcaccggt
caggaggaaattgagacctgcatggagatattgcaagagagagttcggaaactcggcact
aagatccgggagctgatcgttctcccgatatactccaccttaccctcggagctccaggct
aagatctttgagcccacgccccccggcagccgcaaggtggtcctggccaccaacatcgcc
gaaacatcgctgaccatcgacggaatcatctacgtcatcgacccgggtttcaacaagcag
aagagctacaatgccaggaccggcatggagtcattggtggtgaccccagtgtcaaaggct
tcagccaatcagagagctggaagagcaggccgcgtagctgccgggaagtgtttcagactc
tacacggcctgggcttacaagaacgagctagaagaaaacaccattcctgagattcagagg
accaatttgggcaacgtggtgctcctcttgaagagcttgggaattaacgacctcatccac
tttgacttcatggacccaccgcctcacgagaccctggtcttggcccttgagcagctctat
gccctgggtgcgctcaaccacaaaggggagctgactaaaatgggccgacggatggctgag
ttccccgttgaccctatgctgtccaagatgatcctggcctcggaaaagtaccagtgcacc
gaggagatccttagcatcactgccatgctctcggtcaacaacgccatcttctaccggccc
aaggataagatcgtccatgctgacaacgcccgggtcaacttttttgcccccggaggggac
cacttgaccctcctcaatgtctacaaccagtgggttgagacagatttctctacccagtgg
tgttacgagaatttcatccagcaccggtccatgaggcgagcgagggacgtccgagaccag
cttcggggtcttgtagagagggtagagattgcactgacgtcggcacctcatgacaacatc
acgatcaggaaggccatcactgcagggttcttctaccacactgccaagttcagcaagggg
ggccagtaccggacggtcaaacaccagcagacggtcatggtccatcctaacagcagcctg
tttgaggagcagccacgctggctcatttaccacgagctggtcttcaccaccaaggagttc
atgcgacaggttatagagattgagaatgcctggctgttggaggtggccccccactactat
aaggccaaagagcttgaggacacgtccagtaggaagatgcccaagaacacgggcaagagc
agggaggagaccagaacgtga
DBGET
integrated database retrieval system
