Acanthaster planci (crown-of-thorns starfish): 110976864
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Entry
110976864 CDS
T05078
Name
(RefSeq) uncharacterized protein LOC110976864 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
aplc
Acanthaster planci (crown-of-thorns starfish)
Pathway
aplc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aplc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110976864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aplc03021
]
110976864
03019 Messenger RNA biogenesis [BR:
aplc03019
]
110976864
Transcription machinery [BR:
aplc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110976864
Messenger RNA biogenesis [BR:
aplc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110976864
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_helical
zf_PCFS4
Pcf11_C
Pfc11_Clp1_ID
LpxB
Motif
Other DBs
NCBI-GeneID:
110976864
NCBI-ProteinID:
XP_022086204
UniProt:
A0A8B7XZ74
LinkDB
All DBs
Position
Unknown
AA seq
2793 aa
AA seq
DB search
MVLNIILLNSQIGKMTLYCKLFAAELSNQMQRDVYNAFTCAQQIWAAGFSSQAEWWPCHS
ASPIFQNKIHYFFAISRNLISSSHSRHYIASVHLVFVMAETVKREYETALSDLTFNSKPL
ISMLTMLAEENVKHAPQIVEVIESRLQKAKPSEKLPVLYLMDSIIKNVKGAYLEAFTPNV
VQTFCGVFEKVDEKTRQSLFKLRMTWASYFTHTKLYALDLKVKELDPAWPIVADPTTTSH
PAAIHVNPKFIKKPQATVAATKTSQPAATTQATSVQLSGEELAERKKKESERQEMEMRQQ
LLKKQEQLLQLQQKRLEFELQQTQSKLEEQAMELKQKNEQILLQQQVLQQQQHQAAAAAA
AAAATWPGTPQPSLMWPAGHPVLPGQNGPAMILAHDPSIMPMHAKQQQAQHQAQQQAQQQ
VYLPPPPMPPFGQQMVPPMQSVLPTQQVPPVQQGTQAAPATRDPRIARDPRLARRDPRTR
GAADAFPTVPTSTAPTAPAVATVPPVQSTAQGPAMSVAQPLSMSLATSDGVSQAITNQQL
KSVVTVAPSQPTPKPTPKLHTKKDDAAKDSKATDSKQPADQLRETKPDAKPKPSDKDLKS
EVKPKESKGTDSNTEGQKSKIEGPAKQEKSKDVKSNDRSPRRSSDEKRDLRSDSKNRERG
SREPERRTSRDSKKDFDKRDSWPSRDRDSRERDRDYRDRPKERIIGSREPSRIGSSRRKS
NRSRSRSRSPVARSRSPRGSDKVRTTTRGAPKADKFGRDLPRPVKETKEEKKPEPASDIR
KKDADIRKKDDDSHKKDLDNISNKDIDERVKSQRGSKENVPVVKEENKPALGRSEKRRSP
STTPVKETEKEPESKEDAPSKRPRLEEAPPKKPPLPKKTPDSKDQDSRQKEKTPNPDNRA
DDKPLRPRPLMELPPPRPFLEPSGRGSDHPLDGLEYEREMISPPGGWRERPLPRRRLSID
PGVRIPKELSLDKHAFILEQAEKQLLSGELTHQQHQELLRELFELHQIQRQQKDDEHMQR
HPNDSQFRRHYPDDPRVPHHPRSHTDPRKGGMWPRERDIDHRRSSAQDVDMRVFDPGHPL
HAPATKSRGEDPVKPGIKSTDEPLKLPSVDQDDRTRNHVQKDRDDRVKTQLTENEPQRPP
LKSILKSGKPTNPPLESPLSPEPEEKCGSDAVVKTVVDAVSETREKDTDQSGKEDQPETV
AEDKESDALDESKGTASEVMETKDTEGTEETGKGKGKKKNRKKKKKGSGSEAEVHVEISA
FEENLEIKPPVFKENKVQPLMDMDERRNSTDNESANVLPAPFREADDLEDLFPAGKDCDE
RQGPGRPVNPDRDSMRSREVPLPPREGPSHRDHPPRINQIREDHPRDPRLCKGAPEIELR
DNLPRPGPLRDGILGDLPARIPHGEPVPRNHPQRERYFDEVSREGPFRDRPRREGPFWEG
PHKDHLLRRSPPREFREGPPREGQLRGGPRDGPFRDCPPRDGPFRNEHGREQPFREGPPR
EGPFRDCQLRDGLPRHGLFRDILPGWTLYDDDIPREGPYREGHPREGLFREGHPREGLIR
GQFRDDPFRDGRHRVGPPRGSFPDDLGREGQFRESPPRDGPFREGPPGEGSFRRRVPREG
PYREGLFGDDFEQEVPDRGSPPRKGFFKDGPPFERFRGRLPPHDRPHREGSFREGIPLEG
PLRDGPPREGSFRDQFRRSPLRGEQFREGPPARFPRDGPLRDFEEDRDPRRGPPRDRDPR
QERYHAQQEEIKPKPLKTDFPGEVPSTIERFEGPQRGGPTREGPGPLLRMKDRDERQLLL
LDQKPAEHSLVPLPMETQDEPSISTELSVPLPHSQAQHLPVVNPTLNLPAGLGMPSIGVL
PFQVLGGPATSLQGPHPLGLGLVPATSILQGAGLPPMSLSQAGGQRPIMVPGVQAVPQQF
PGVIRPTTMSEKEPQQGVLDPRGLPQPGQMAAPGTLNPARMGAPHLMLSENPQGTPPPQQ
AAPLDVSALFAKLVATGIIPPTRSDSPVVQGTETPPPTVGKEESEPTVAEQNENTFVPEL
GFYPEELKCRYEGVINRIYTGTQCSSCGMRFVVDEMDRYRKHLDWHFRQNRRDKDGMKAA
QNRKWFYEVGQWLDFEEINDMDEERSNFFEAMALQARTDKDGVHCVAVDAGVEGDEMCSL
CHEPFEQFFDEDEEVWKLKDAVRFNRRTYHPGCYEDAKDAFLLETPTPGEDGLHTSFDAM
VSPLSAYSQRSASLGIQLESPEKLTGAPKDNNNEPSGQTITQLQSAYPKREVGNDVNVPT
APPQSTDQPKNTESQQVDVAAVVPVSTDQSLGPQSVVTAVVPASTDQPVGTQSVVTAVVP
ASTNQPLGTQSVVTAVVPASTDQPVGTQSVVTAVVSASTDQPVGTQSVVTAVVPASTDQP
VGTHNVVEAVVPASTDKLVGPQSVAAAAVPTLTDQPVGSQIVVAAVVPASTEQPVGPQSV
VAAVVPASTDQPVGSQSVVAAVVPESTDQLVGPQNDSSTGIEQSADLHVNSQTTARTEGA
DQPMETSVIAEPTVLVKQELIETGVDSGVKMECLVDPEVKMEVDEPEARANSYPQSVEAA
EKMEVDDAQAVPQDSAIVENVPAAESTSETASSAETVVKEEPVDNVGQPETAPESALETT
VEAAARPEAVEPSPSEFFPSLMPEQSPASTGAASEPPSTKLLSKIEPRDVQKGACDEAKP
GQERETSVSSDPACKAKTQQSQPEAKAPSTSQKEAGTDAKESTDSVAKPSQTDSDKQSLS
KTTAVNEVQNIQAISVIGRARVDTQRRRDMFYR
NT seq
8382 nt
NT seq
+upstream
nt +downstream
nt
atggtgctaaatattatacttttaaactcacaaattggtaaaatgactctgtactgtaaa
ttatttgcagcagaattgtccaatcaaatgcagcgtgatgtttacaacgcttttacctgt
gcgcaacaaatttgggcagctggattttcgtcgcaggcagagtggtggccttgccactcg
gcgtctcccatatttcaaaacaaaatacactatttttttgcaatttcccgaaatttgatt
tcttcaagtcattcccgtcactacatagcctccgtacatctggttttcgtcatggcggag
acagtgaaacgagaatacgaaacggcgttgtccgacctcaccttcaacagtaaaccgctg
atcagcatgttgacgatgttggcggaagagaacgtgaagcacgcgccgcaaatcgttgaa
gtcatcgaatcccgacttcagaaggccaaaccctctgaaaaactaccagtcctgtacctc
atggattctatcatcaagaatgtgaagggtgcttacctcgaggcatttaccccaaatgtc
gtgcagacattctgcggtgtatttgaaaaggttgacgaaaaaaccagacagtcccttttc
aaactgcggatgacgtgggccagttacttcactcacaccaaactgtatgcgttggacttg
aaggtgaaagagttggacccagcatggcctattgttgccgaccctactactacctcccac
cctgctgctattcatgttaaccccaagtttattaaaaagccccaggccactgtggcagcc
actaagacatcccaaccagccgccaccacccaggccaccagtgtacagctgagtggggag
gagttggctgaacgcaagaagaaggagagcgaacgacaggagatggagatgaggcagcag
ctgctcaagaaacaggaacagctgctgcagctgcagcagaaacggctggagtttgaactg
cagcagacacagagcaaattggaggaacaggctatggagctcaagcagaaaaatgaacag
attcttctgcagcagcaagtcctccaacagcagcagcatcaggcagcagcagctgctgca
gctgcagcagcaacttggccagggaccccccagccatccctcatgtggcccgctggacac
cctgtgctgccaggccagaacggtcctgccatgatattagctcatgacccgtcgataatg
cctatgcacgccaagcagcagcaagcacagcaccaagcacagcagcaagcacagcagcag
gtgtatttgccacccccacccatgccaccatttggtcagcagatggttccacccatgcag
tctgttcttcctacgcaacaagtcccaccagtccaacagggaactcaggctgcaccggct
acccgagaccctcgcatagctcgtgatcccagactagctcgccgtgatcccaggactcgt
ggtgctgcagatgcctttcctacagtgcctacatcaacagctccaacggcgccagcagtt
gccactgtacctccggtccaaagcacagcacagggtccagccatgtcagtcgcccagcca
ctgtccatgtcactagctacctccgatggtgtgtcacaagccattactaatcagcagctt
aaaagtgtggtcactgttgcaccttcacagcctactcccaaaccaactcccaagttgcat
acgaaaaaagatgatgcagctaaggacagtaaagccacagactcaaagcagccagctgac
cagttacgggaaactaaacctgacgccaagccaaagcccagtgacaaggacttaaaatca
gaggtcaagccaaaagagtcaaaaggaacagattcaaacacagagggccaaaagtccaaa
atagaaggacctgccaagcaagagaaatcaaaggatgtgaaatctaacgatcgctctcca
cgccggtccagtgatgagaaaagagacttgagaagtgacagtaaaaacagagaaagaggc
tcccgtgagccagagagacgaacaagccgagattccaagaaggactttgataaaagagac
agctggcccagtagagatcgggatagcagagaacgagaccgagactaccgtgaccggccc
aaggagagaatcattggctccagggaaccctccaggattggcagctccaggcggaaatct
aacaggtctcgctcacggtcaagatccccagttgcaaggtcgcgctctccgcgtggttca
gataaggttcgtactaccacacgcggagcccccaaggcagacaaatttggcagggacttg
cctcgccctgtcaaagaaaccaaggaagaaaagaaaccggaacctgcctccgacatacgc
aagaaagatgctgatatccggaagaaagatgatgacagtcacaagaaagaccttgataac
atttccaataaagacattgatgagcgtgttaaatcacaacgtggcagtaaagaaaatgtg
ccggtcgttaaggaggaaaataaacctgcactgggacgatctgagaaaagacgatcacct
tcaacgacacctgttaaagaaactgaaaaagagccagagtctaaagaagatgcacccagt
aaacgaccccgcttagaagaagcgccaccaaagaagccaccactgcccaaaaagacacct
gactctaaggaccaggatagtcggcaaaaagagaagacaccgaacccagacaacagagca
gatgacaagccccttagacctcgtccactgatggaacttccacccccacgacctttcctt
gagcctagcggccggggaagtgaccatccccttgatggactggagtacgaaagagaaatg
atctcccctcctggaggctggagagaaaggccactgcccagacgacgactcagcatcgac
ccaggtgtccgcattccaaaggagttgtcactggataagcatgccttcattttagaacag
gctgaaaagcaactcctttctggtgaattgacccaccagcaacatcaagaacttttgcgt
gaactgtttgagctgcatcaaatccagagacaacaaaaagatgatgagcacatgcagcgc
caccccaatgattcgcagttcaggaggcactacccagatgatccaagagtgcctcatcac
ccaagatcgcacacagacccaagaaaaggtgggatgtggccacgagagagggacattgac
catcgcaggtcatctgctcaggatgtggacatgagagtctttgacccaggacaccctttg
catgctccagcaaccaagtctagaggtgaggacccagtcaaaccagggataaaatcaacg
gatgaaccgttgaaactgccaagtgttgaccaggatgacaggaccaggaaccatgtgcag
aaggatcgtgatgacagagtaaagacccagctcaccgagaatgaaccccaaaggccccct
ctaaagtccattttgaagtcaggaaagcctactaacccaccccttgaaagtcccctgtcg
ccagagcctgaagaaaaatgtggcagtgatgccgtggtcaaaacagttgttgatgctgta
tcagagactcgagagaaagatactgatcagtctggaaaagaagaccaacctgagacagtg
gcagaagacaaagaatcagatgcgttagatgagtctaagggtactgcatcagaggtcatg
gaaacaaaagacacggaagggacagaagaaactggaaagggtaaaggtaaaaagaagaac
agaaaaaagaaaaagaagggctctggcagcgaagctgaggtccatgttgaaatctcagct
tttgaggagaaccttgaaataaagcccccagtttttaaagagaacaaagtccaacctctt
atggacatggatgagcgccgaaattccacagataatgagtcagctaatgtgctgcctgct
ccatttagagaagcagatgatttagaggatttgttcccagctggaaaagattgtgatgag
cgtcaaggtccaggacgtccagtcaatccagacagagatagtatgcgatccagagaagtt
cctcttcctccaagggaaggtccttcacacagggatcatccaccaaggattaatcagata
agagaagaccatccaagggatccaaggctttgtaaaggtgcccctgaaattgaactaaga
gataatcttccaagaccaggcccattacgagatggcattttgggtgatctccctgcaaga
attcctcatggtgaacctgtgccaagaaatcacccacagagggaacgatattttgatgaa
gtttctagagaaggtccatttagagatagaccaaggagggaaggacctttctgggaggga
ccacataaagatcatctgttaagacggagccctccaagggaatttagggagggtccacca
agagaagggcaactgcggggaggacccagagatggtccattcagagactgtccaccaaga
gatggaccttttagaaatgaacatggcagggaacagccttttagagaaggtcctccacga
gaaggtccattcagggattgccagttaagagatggtctgcccagacacggtctatttaga
gatattctaccaggatggaccctgtatgatgatgacataccaagagaaggcccttataga
gagggtcatccaagagaaggcctgttcagggaaggtcaccccagagaaggcctaataaga
ggccagtttagagatgatcccttcagagacggacgccatagagttggtcccccaagaggt
tcttttccagatgatttaggaagagagggtcagttcagagaaagcccaccacgagatggt
cccttcagagaaggcccacccggagagggttcattcagaagaagggttcccagagaaggg
ccatacagagagggcctgtttggggatgactttgagcaagaagttccagacaggggtagt
cctccaagaaaaggcttttttaaagatggtccaccttttgagcgattcagaggacgtctt
ccaccacatgatcgacctcatagagaaggttcatttagagagggcattccattggaaggt
ccactgagagacggtcctccccgagaaggctcatttagagaccagtttaggagaagccca
ctgagaggtgaacagtttagagaaggtcctcctgcaagatttccaagagatggccctctt
agagactttgaagaggatagagacccaagacgtggccctccacgtgaccgtgacccaaga
caggaaagataccatgctcagcaagaggagataaaaccaaagccattgaagacggacttc
cctggtgaagtaccatccaccatagagagatttgaaggcccacaaaggggaggtcctacc
agggagggacctggaccattactacgaatgaaagacagagatgaacgccaactgctgctc
ttggaccaaaagcctgcagagcattcacttgtgcccctgccaatggagactcaggatgaa
ccttcaatatccacagaactttcagtgcctttaccccattctcaggcccagcatctgcca
gttgtaaaccctaccttaaatcttcctgcaggccttgggatgcccagcataggcgtgctt
cccttccaggtccttggcgggccagccactagtctccagggtcctcacccgctgggtctt
ggacttgttcctgccaccagcatcttgcagggggcaggacttcccccgatgagtttaagt
caagccggagggcagaggccaattatggtgcctggagtgcaggccgtcccccagcagttc
ccaggagtcatcagaccaactacaatgtctgaaaaggaaccccaacaaggtgtccttgac
cccagaggcttacctcaacctggacagatggctgcccctgggacactaaaccctgcccgg
atgggagcgccacatctcatgctgtcagaaaatccgcaaggtacaccacccccacaacag
gcagcacctctggatgtcagtgcgctctttgccaagctagttgcgactggaattatccct
cccaccagaagtgactcccctgtggtacagggaactgaaacaccacccccaacagttggc
aaggaggagtcagagcctacagttgcagaacagaatgagaacacatttgtcccagagctt
ggattctacccagaggaactcaaatgtcgatatgagggtgtcatcaatcgcatctataca
gggacccagtgctcatcatgcgggatgcgctttgttgttgatgaaatggacagatatcgt
aagcacctggactggcacttccgtcagaatcgtcgggacaaggatggcatgaaggctgcc
cagaacaggaagtggttctatgaggttggccagtggctagactttgaagaaatcaatgac
atggatgaagagagaagtaacttcttcgaagcgatggcactgcaggcgcggaccgacaaa
gatggtgtgcactgtgtggcagttgatgccggcgttgaaggtgatgagatgtgcagtttg
tgtcatgagccatttgagcagttctttgatgaagatgaggaagtgtggaagctgaaagat
gctgtcagattcaacagacgtacctaccatcctggctgttacgaggacgcaaaggatgcc
ttcctactagaaacccctaccccaggtgaggatggactacatacttcatttgatgcgatg
gtgagtcctttatcagcatattctcaacgcagtgcatctctaggaattcagttggaatca
ccagagaagttgacaggtgcaccgaaagacaacaacaatgaaccaagtggacaaactatt
acgcaactccagtcagcatatccaaagagagaagttggaaatgatgtgaatgttccaaca
gctccacctcagtcaacagatcaaccaaagaacactgaaagtcaacaggttgatgtggca
gctgtggtaccagtatccactgatcaatcattgggtccacagagtgttgtgacagctgtg
gtacctgcatcaaccgatcaaccagtgggtacacagagtgttgtgacagctgtggtacca
gcatccactaatcaaccactgggtacacagagtgttgtgacagctgtggtacctgcatca
accgatcaaccagtgggtacacagagtgttgtgacagctgtggtaagtgcatcaaccgat
caaccagtgggtacacagagtgttgtgacagctgtggtaccagcatccactgatcaacca
gtgggtacacataacgttgtggaagctgtggtaccagcatcaactgataaactagttggt
ccacaaagtgttgcggcagctgcggtacccacattaactgatcaaccagtgggttcacaa
attgttgtggcggctgtggtaccagcatcaactgagcaaccagttggtccacaaagtgtt
gtggcagctgttgtaccagcatcaactgatcaaccggttggttcacaaagtgttgtggca
gctgttgtacctgaatcaactgatcaactcgtgggtccacagaatgacagcagtacaggc
attgaacagtcagcagatctgcatgtcaacagccagactacagcaaggacagaaggggca
gaccaacccatggagacatctgttattgcagagccaactgtactcgtaaagcaagaactg
attgagaccggtgtagactctggtgtgaagatggagtgtcttgttgaccctgaagtcaaa
atggaggttgatgaacctgaagccagagccaacagctacccacagagcgtggaagctgcc
gagaagatggaagttgatgatgcacaggcagtcccgcaggatagtgctattgttgaaaac
gtgccagcagcagagagtacttctgagactgcatcatctgcagagacagttgtgaaggaa
gaaccagtggataatgttggacaaccagaaacagcgcctgaatcggctttagaaacaaca
gttgaggctgcagctagacccgaagctgtagaaccgagcccatcagagttcttccccagc
ctgatgcccgaacagtctccagcaagtacaggagcagcatcagaaccaccatccaccaag
ctgctttctaaaattgaaccaagggatgtgcagaaaggggcttgcgacgaggccaagcca
ggccaagagagggagacgtcagtctccagtgatcctgcctgcaaggcaaaaacccagcaa
agccagccggaagcaaaagcaccaagcacatcgcaaaaggaggctggtacagatgccaaa
gaaagcacagactctgtggctaaacccagccagactgacagtgacaagcagtctttgagc
aaaactacagctgtaaatgaagtgcagaacattcaggcaatcagtgttataggaagggcc
cgggtagatacccaaaggaggagagacatgttttataggtga
DBGET
integrated database retrieval system
