Acanthaster planci (crown-of-thorns starfish): 110979242
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Entry
110979242 CDS
T05078
Name
(RefSeq) nuclear RNA export factor 1-like isoform X1
KO
K14284
nuclear RNA export factor
Organism
aplc
Acanthaster planci (crown-of-thorns starfish)
Pathway
aplc03008
Ribosome biogenesis in eukaryotes
aplc03013
Nucleocytoplasmic transport
aplc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aplc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110979242
03015 mRNA surveillance pathway
110979242
03008 Ribosome biogenesis in eukaryotes
110979242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aplc03019
]
110979242
03009 Ribosome biogenesis [BR:
aplc03009
]
110979242
Messenger RNA biogenesis [BR:
aplc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
110979242
mRNA cycle factors
Stress granule specific factors
110979242
Ribosome biogenesis [BR:
aplc03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
110979242
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tap-RNA_bind
TAP_C
LRR_9
LRR_4
LRR_8
NTF2
Motif
Other DBs
NCBI-GeneID:
110979242
NCBI-ProteinID:
XP_022090549
UniProt:
A0A8B7YBC6
LinkDB
All DBs
Position
Unknown
AA seq
679 aa
AA seq
DB search
MSRRNNRNRDGGRSQQYYGHDDRDQVGGHWRGGHPGGRSHRGGRGGPAGRDRNQDSGPSG
GKWQRGKGPRRGGGPSDRGRYQGPHPRSRFTDDDGDVQMGDAEEGTSQRFNPYGRPNSRR
KNRPNNRDSRGGGGARGSASSMARLGLPINTGHKDRGATGHNRPSDGKGKRAGQSWAKII
IPYGKKVEKDWLLTSLQNLCSVPFIPFEFHYEGERAIFHVDDVTTGSALKAISNRITTKT
GHKVVVISHPCQPLAVLKGDDFEVLKVCLSDRYDPSTKALNLSNLIDDQALKSKGVLGIL
SRNHIMEAVIKIISENIPEVLSIDISHNKLYNLKTFGKLAEKACQLRSLNLAKNKIRGIS
ELEPIREFSKLEELFLQGNEIVEKPNYTSIVRQNFPKVIRLDRQELPPLIAFDVESPTVL
PPVQHSYCGSSQIKKPLLSFLEKYFTVFDSGDRQSFIEVYHDQACFSMMCQNSPISSPHI
RKYIPQSRNLLRIKDLTTESSFKLFKSTKVAVVAQLNEMPPTKHDTNSFQVDLSMVQGDL
ICFTLHGIYKEFSNNRSSSHMVAFSRVFLAQMQPPKLCIINDHLSIREPTRTQLKAAFAS
PAPTPSTSPVNVPQGSLSPGHGLSALQQEMVAKFIKDSNMNAEWSIKCLAENEWDYERAG
VSFTTLQTAGKIPVEAFVK
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaagaaataaccggaatagggatgggggtcgcagtcagcagtactatggtcat
gatgaccgagatcaagtaggaggtcactggaggggaggacaccctggaggcaggagccat
cgaggaggacggggagggccagccggccgagacaggaaccaagacagtggtccatcagga
ggcaagtggcaacgaggtaaaggtccaaggaggggtggtggaccaagcgacagaggtaga
tatcaagggccacaccctcgctccaggtttacagatgacgacggtgatgtgcagatggga
gatgccgaggagggcacctcccaaagattcaacccctacggacggcccaacagcaggcga
aagaaccgccccaacaaccgagactccaggggaggtggcggggccagagggagcgcctcg
tccatggccagactgggcctaccgatcaacacaggacacaaagacaggggggcaactgga
cacaacaggcccagtgatggcaagggcaagagagctggacagagttgggcaaagatcatt
ataccctatggaaaaaaggttgagaaagactggctcctcaccagtttacagaatctttgc
tccgtccccttcataccatttgagtttcattatgaaggtgagagggcgatattccatgtg
gacgatgtaacaacgggcagtgcgctcaaggccatcagcaatcgcattacaaccaaaaca
ggtcacaaggttgttgtgatttctcatccttgtcaacccctggctgtgctaaaaggcgac
gattttgaggtcttgaaggtgtgcctgagtgaccgctacgatccatctaccaaggccctc
aatttaagcaacttgattgatgaccaagctctcaagagcaaaggtgtgttaggcatcctc
agcagaaatcacatcatggaggctgtcatcaaaatcatctccgagaatatcccagaggtc
ctgtccatagatatcagccacaacaaactgtacaacttgaaaacgtttggcaaactggcg
gagaaagcctgccagctacggagtctgaatctagccaagaacaaaattcgtggcatttca
gaactggagcccatcagagagttcagtaagctggaggagttgtttctacaaggcaatgaa
atagtggaaaagcccaactacacaagcattgtccggcaaaacttccccaaggtcatccga
ctcgataggcaagaactcccgccgctcattgcctttgacgttgagtcacccacagtcttg
ccgccagtgcagcacagctactgcggcagcagtcagatcaagaaaccgctcttaagtttc
ctggagaaatatttcacagtatttgactcgggcgacagacagtcgttcattgaggtttac
cacgaccaggcctgcttctcaatgatgtgtcagaactcacctatttcaagcccacacatt
aggaaatacatcccccagagccgcaacctactcagaataaaagacctgacaacagagagc
tccttcaaactgttcaagtccaccaaagtggcggtggtagcccagctcaatgagatgccc
ccgacgaagcacgacaccaattcattccaggtggatttatccatggtacagggcgacctt
atctgtttcaccctgcatggaatctacaaagagttcagcaacaacaggtcgtcatcacac
atggttgcgttcagtcgagtgttcctagctcagatgcagccgccgaagctgtgcatcatc
aatgaccatctttcgatcagagaacccacccgcactcagttgaaggctgccttcgcttcg
ccagcccctactccttccactagtcctgtgaacgtcccccagggttctttgtcccctggc
catggcctgagtgccctgcagcaggagatggtggccaagttcatcaaggactccaacatg
aacgccgagtggtccatcaaatgtctggcagagaatgaatgggactatgagagggcaggc
gtgtcattcacgacgttgcaaactgcaggcaagataccagtcgaggctttcgtcaaatga
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