Acanthaster planci (crown-of-thorns starfish): 110979474
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Entry
110979474 CDS
T05078
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPD subunit-like isoform X1
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
aplc
Acanthaster planci (crown-of-thorns starfish)
Pathway
aplc03022
Basal transcription factors
aplc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aplc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110979474
09124 Replication and repair
03420 Nucleotide excision repair
110979474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aplc03021
]
110979474
03036 Chromosome and associated proteins [BR:
aplc03036
]
110979474
03400 DNA repair and recombination proteins [BR:
aplc03400
]
110979474
Enzymes [BR:
aplc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110979474
Transcription machinery [BR:
aplc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
110979474
Chromosome and associated proteins [BR:
aplc03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
110979474
DNA repair and recombination proteins [BR:
aplc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
110979474
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
DEAD
ResIII
nSTAND3
AAA_11
FSIP1
PolyA_pol_RNAbd
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
110979474
NCBI-ProteinID:
XP_022090985
UniProt:
A0A8B7YF20
LinkDB
All DBs
Position
Unknown
AA seq
760 aa
AA seq
DB search
MKLNVDGLLVYFPYDYIYPEQYTYMLELKRALDAKGHCVLEMPSGTGKTVSLLSLIVAYL
RANSSDLTKLIYCSRTVPEIEKVLEELKGLIEYYEKETGEAANLLGLVLSSRKNMCIHPQ
VSKEHTGKVVDHKCHELTASFVRERQKYDPTIPVCSFFEEFDAHGRDIPLAAGAYSLDDI
KEAGQQNGWCPYFMARHAIYHANIIVYSYHYLLDPKIAELVSKELSKKSVVVFDEAHNID
NVCIDSLSVHITRRTLEKSQNNLDAIKRNIDRIKETDAQRLQEEYQRLVEGLRDASQARE
MDIQMANPVLPDAVLEEAVPGNIRHAEHFIAFMKRFVEYLKTRLRVQHVVAESPPAFLKD
VYGKVCIERKPLRFCAERLHSLLRTLELTEIQEMSPLTLVANFATLVSTYTKGFSLIIEP
FDDKTPTIPNPVLHFSCMDASIAIKPVFDRFQSVVITSGTLSPLEMYPKILDFRPVTMAS
FTMTLARNCICPMIVTKGNDQVTISSKFETREDIAVIRNYGNLLVELCKIVPDGLVCFFT
SYVYMENIVASWYEQGIIDNIQKSKLLFIETQDGAETSVALQNYYKACENGRGAVLLSVA
RGKVSEGVDFDHHYGRAVVMFGIPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRALRGKTDYGIMIFADKRFSRADKRGKLPKWIQEHLKDSVLNLSTDEAIQMSKRF
LRHMAQPFSREDQLGLSLLTLEQLESAEMRKKVEQTAHQV
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagttaaatgttgatggtctgctcgtttactttccatatgactacatctatcctgag
caatacacctacatgctggagctcaaaagagctctggatgcaaagggtcactgtgtcctt
gaaatgccctcggggacggggaagactgtatcgcttttatccctcattgtggcctacttg
agagccaactcttccgatctcaccaagctcatctactgctcgcgaacagtgccggagatt
gagaaggtcctcgaagagttgaaaggactgatagaatactatgagaaggagaccggtgaa
gcagccaacctccttggactggtcctgagctcccggaagaacatgtgcatccatccacag
gtaagcaaagagcacacaggcaaggtggtggaccacaaatgccacgagctaacagcatcc
ttcgtccgagagaggcagaagtatgaccccaccattccggtgtgttccttctttgaggaa
tttgatgcccatggaagagatattccattagccgccggtgcctacagtctagatgatatc
aaggaagctggtcagcagaacggatggtgtccgtacttcatggctcggcatgcgatatac
catgccaacatcatagtgtacagttatcactatctactggacccaaagattgcagagttg
gtctccaaagagctctccaagaagtcggtggttgtatttgatgaagcgcataacattgat
aacgtgtgcatcgattccctgagtgtgcacatcacacggcgaaccttggaaaagagtcag
aacaacctggatgctatcaagagaaacattgacagaatcaaagaaacagatgcacagcga
cttcaggaggagtaccagagacttgttgagggccttagagacgctagccaggctcgggag
atggacatacagatggcaaacccagtacttcctgatgctgtgttggaagaggccgtgcca
ggtaatatccgtcatgccgaacatttcatcgccttcatgaagagattcgtagagtaccta
aagaccaggctacgagtgcagcacgttgtagctgagagtccccctgccttcctgaaggat
gtctacggaaaagtctgcattgagagaaagcccctcaggttttgcgccgaaaggttgcac
tcgctgctgcgcacgctggagctgaccgagatccaggagatgtcacctctgaccttggta
gccaactttgcaaccttagtgagcacatataccaaaggttttagcctgattattgagccg
tttgatgataagacaccaacaattccaaatccagtgctacatttcagttgtatggatgct
tccattgctatcaagcctgtgtttgatcgattccagtccgttgtcataacatcagggacc
ttatccccactggaaatgtatccaaagattctggatttcagacctgtcaccatggcatca
tttacaatgacccttgccagaaactgtatttgtccaatgattgtgacaaagggcaacgac
caagtgactatttcttccaagtttgagaccagggaagatattgcggtaattcgtaactat
ggcaatctgctggtggaattgtgtaagatagtgccagatgggctggtgtgcttcttcaca
agttatgtgtacatggagaatattgttgccagttggtatgaacaggggatcattgacaac
atccagaagagcaagctgctatttatagaaacccaggatggagcagagaccagtgtggca
cttcagaactattacaaggcctgtgagaatggaagaggggctgtcctactgtctgttgca
aggggcaaggtctctgaaggagttgattttgaccatcattatggtcgagcagtagtcatg
tttggcattccgtatgtgtatacgcaatcccgaattctgaaagccagactggagtatctg
cgagatcaatttcagatccgggagaatgactttctgaccttcgatgccatgcgacatgca
gctcagtgtgtggggcgtgccctaagagggaagacagattatggcatcatgattttcgct
gataagcggttttcccgagccgacaagcggggtaagctgcctaagtggatccaggaacac
ctgaaggacagcgtcctgaacctgtcaactgatgaggcgatccagatgagcaagcggttc
ctgcgacacatggcccagccgttcagcagggaggaccagcttggcctgtccctacttacc
ctggaacagctagagtcggcggaaatgcgcaagaaggtggagcagacagctcatcaagta
tga
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integrated database retrieval system
