Acanthaster planci (crown-of-thorns starfish): 110980806
Help
Entry
110980806 CDS
T05078
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
aplc
Acanthaster planci (crown-of-thorns starfish)
Pathway
aplc03020
RNA polymerase
aplc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aplc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110980806
09124 Replication and repair
03420 Nucleotide excision repair
110980806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aplc03021
]
110980806
03400 DNA repair and recombination proteins [BR:
aplc03400
]
110980806
Enzymes [BR:
aplc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110980806
Transcription machinery [BR:
aplc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
110980806
DNA repair and recombination proteins [BR:
aplc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
110980806
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
110980806
NCBI-ProteinID:
XP_022093490
UniProt:
A0A8B7YM18
LinkDB
All DBs
Position
Unknown
AA seq
1924 aa
AA seq
DB search
MALQFHDSKAPMRDVRRVQFGVLSPQEVRRMSVVEGGIKYAEVMEGGKPKLGGLMDPRQG
CVDRISRCQTCACNQVDCPGHFAHIELAKPVFHPGFLTKTVKVLRCVCFFCSKLLVDQNH
PKVKEILNKSKGFPRKRLAHIYDVCRGKKICEGGEEMDQTFNADLAKREGEVPEPRAQGH
GGCGRYQPQIRRNGLDLTAEWKHVNEDTQERKIALTAERVHEIFKRISDEESAILGMEPK
FTRPDWMIITVMPVPPLCVRPAVVMFGTARNQDDLTHKLADIIKANNQLQKNEQNGAAAH
IIAEDTRMLQFHVATLSDNELPGLPRAMQKSGRPLKSVKQRLKSKEGRIRGNLMGKRVDF
SARAVITPDPNLSIDQVGVPRTVAQNLTYPEIVTPFNIDKLQELVRVGHNQYPGAKYIVR
DNGERVDLRYHPKTSDLHLQCGYKVERHLRDDDVVIFNRQPTLHKMSMMGHRVKILHWST
FRLNLSVTTPYNADFDGDEMNLHVPQSMETRAEVTEIMMVPRQMVTPQSNRPVMGIVQDS
LTAVRKFTKRDVFLQKEELMNLLMWLPNWDGHIPQPAIIKPRPLWTGKQMMSLIIPPNVN
LIKAHSTHPDEEDRGPYKWISPGDTKVLITNGELISGIVCKKTIGASGGSLGHVIFMERG
PDETRDFYGNIQTVVNNWLLLEGHSIGIGDCIADAQTYEDIQNTIRKAKQEVIEVIEKAH
NDELEPTPGNTLRQTFENQVNRILNNARDKTGGSAQKSLSEFNNFKCMVVAGSKGSKINI
SQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEMFFHAM
GGREGLIDTAVKTAETGYIQRRLIKAMESVMVRYDGTLRNSNDHLVQLRYGEDGLDGTKV
EFQNLPTLKPSHRAFEKRFRFDCTNERALRRSLTENIVKDVVANAQVHLEIEKEYEQLRE
DREIMRKILPMGESKVVLPCNLERMIWNAQKIFHINPRHSTDLHPLMIVKGVRDLSKKLI
VVKGEDRISKQAQENATLLFNMMLRSTLCSRRVIEEYHLTNESFDWLLGEIETRFNQALV
HPGEMAGPLAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKRPKTPSLTV
FLVGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPEPQNTVIEEDQDWVNLYYEMPD
FDPARISPWLLRIELDRKRMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MSSEESKFGEEEEQVDKMEDNVFLRCIESNILTDMTLQGIEQISKVYMHLPQQDNKKRII
ITEEGEFKPIQEWLLETDGTSMMKVLSDKEVDPVRTFSNDICEIFQVLGIEAVRKSVERE
MNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQDVGALMRCSFEETVDILMD
AAAHAEVDHLKGVSENIMLGKLAGVGTGSFSLLLDAEKCKHGMEIPMGMGGGLGGMTGMF
FGAAASPSASMSPQMTPWNQGATPAYGASWSPMGSGMTPGAAGFSPSAQSDASGFSPGYS
PAWSPQPSSPGSPGPTSPYIPSPASPMSPSYSPASPSYITGSPATPQSPGYSPTSPSYSP
SSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPKYSPT
SPSYSPTSPSFSAKSPSYSPTSPSYSPTSPSYSPTSPAGYSPQSPSYSPGSPSYSPSSPK
YSPSSPSYSPTSPSYSGSHFTPTSPEYSPTSPTYSPASPSYSPSSPKYSPSSPKYSPASP
TYSPQTPKYSPTSPSYSPTSPKYSPSSPSYSPTSPQDSYSPMSPGYSPASPSYSPSSPDI
EADD
NT seq
5775 nt
NT seq
+upstream
nt +downstream
nt
atggcactccagtttcacgactccaaagccccgatgcgcgacgtcagacgggtgcagttt
ggtgttctcagccctcaagaagtgcgtcgcatgtcggtggtggagggcggcatcaagtac
gccgaggtgatggaaggcggcaaacccaagctgggtgggctgatggacccccggcagggc
tgtgtggatcgcatctctcgctgccagacctgtgcctgcaaccaggtggactgcccgggc
cactttgcccacattgagctagccaagcccgttttccaccctggcttcctgaccaagacg
gtcaaggtgctgcgctgcgtctgcttcttctgctccaagctgctggttgaccagaaccac
ccaaaggtcaaggagatactgaacaagtccaaggggtttccccgcaagcggctggcccac
atctacgacgtgtgccggggcaagaagatctgcgagggtggcgaggagatggaccagacc
ttcaatgccgacctggccaagcgggaaggggaggtgcccgagcctcgagcccagggtcac
ggtggttgtgggcgctaccagccccaaatccgccggaacggcctggatctgacggccgag
tggaagcacgtcaacgaggacacgcaggagcgcaagattgccctgacagccgagcgcgtg
cacgagatcttcaagcgcatctcggacgaggagagcgccatcctgggcatggagcccaag
ttcacccggcccgactggatgatcatcaccgtcatgcccgtcccgccgctctgtgtccgc
ccggccgttgtcatgtttggtacagctcgtaaccaggatgatctgacccacaagttggca
gacatcatcaaggccaacaaccagctgcagaagaacgagcagaacggagcggccgcccac
atcatcgccgaggacaccaggatgctgcagttccacgtcgccaccctgtccgacaacgag
ctcccaggacttccaagggccatgcagaagtctggtcggcccctcaaatccgtcaagcag
cggctgaagagcaaagagggccgtatccgtggtaacctgatgggaaagcgcgtggacttc
tccgcccgtgccgtcatcaccccggaccccaacctgtccatcgaccaggtgggggtgccc
aggactgtcgcccagaatctgacctacccggagattgtcacgcccttcaacatcgacaaa
ctccaggagctggtgcgggtaggccacaaccagtacccgggggccaagtacatcgtccgc
gacaacggcgagcgggtggacctgaggtaccaccccaagacgagcgacttgcacctgcag
tgcggctacaaggttgagcgccaccttcgggatgacgacgtggtcatcttcaatcgacag
cccaccctccacaagatgtccatgatgggtcatcgggtcaagattctccactggtccaca
ttccgtctcaacctcagtgtcaccaccccctacaacgccgactttgacggggacgagatg
aacctgcacgtgccccagtccatggagacgcgggccgaggtgacggagatcatgatggtg
ccccgccagatggttaccccacagtccaaccggcccgtcatgggaattgtgcaggactcc
ctgaccgccgtgcggaagttcaccaagcgcgacgtcttcctgcagaaggaagagctgatg
aacctcctgatgtggctgcccaactgggacggtcacatcccccagccggccatcatcaag
ccccgccccctgtggacaggtaagcagatgatgtcgttgatcattccgccaaacgtcaac
ctgatcaaggcccacagcacacaccctgacgaggaggaccggggaccctacaagtggatc
tcccccggtgataccaaggtgttgatcaccaacggggagctgatctcgggcattgtctgc
aagaagaccatcggggcctccggcggctccctgggccacgtcatcttcatggagcgtggc
cccgacgagacccgcgacttctacggcaacatccagacagtggtcaacaactggttactg
ctggagggccacagcatcggtatcggtgactgtatcgccgatgcgcagacctacgaggac
atccagaacaccatccgcaaagccaaacaggaagtaatagaggtcatcgagaaggcccac
aatgacgaattggagccgacgcccggcaacaccctcagacagacctttgaaaaccaggtg
aaccgtatcctgaacaacgcccgtgacaagaccggtggcagtgcccagaagagcctgtcc
gagttcaacaacttcaagtgcatggtggtggccgggtctaagggctccaagatcaatatc
tcccaggttatcgcctgtgtgggccagcagaacgtggaaggcaagcgtatcccctttggc
ttccgccaccgcaccctgccccactttatcaaggacgactacggccccgagagcagaggc
tttgtggagaactcctacctggccggcctgaccccctcagagatgttcttccacgccatg
ggcggccgagagggtctgatcgacaccgccgtcaagactgccgaaaccggctacatccag
cggcgactgatcaaggccatggagagcgtcatggtacgctacgacggcacgctgcgtaac
agcaatgaccacctggtgcagctgcgctacggcgaggatgggctggacggcaccaaagtg
gagttccagaacctgcccaccctcaagccctcccaccgggccttcgagaagcgcttccgc
ttcgactgcaccaacgagagagcgttgcggcgcagcctgacggaaaacatcgtcaaggac
gtagtagccaacgcccaggtccacctggagattgagaaggagtacgagcagctgagggag
gaccgggagatcatgaggaagatcctacccatgggagagtccaaggttgtcttgccctgt
aatctggagcgcatgatctggaacgcccagaagatcttccacatcaaccccaggcactcc
acagacctgcatcctttgatgattgtgaagggcgtccgggacctgtccaagaagctgata
gtggtcaaaggggaggaccgcatcagcaagcaggcccaggagaacgccaccttgctcttc
aacatgatgctgcgctccaccctctgctcccgccgtgtcatcgaggagtaccacctgaca
aacgagtcctttgactggctgctcggggagatcgagactcgattcaaccaagctctggtc
caccctggtgagatggcgggtccactcgccgcccagtcccttggggagccggccacccag
atgaccctcaacaccttccactacgccggcgtgtcggccaagaacgtgaccttgggtgtg
ccccgcctcaaggagatcatcaacatctccaagaggcccaagaccccctcgctgactgtc
ttcctggttgggcaggcagctcgagatgccgagagagcaaaggatatcctgtgccggctg
gagcacaccaccctgcgcaaggtgacagccaacacggccatctactatgacccggagccc
cagaacaccgtcatcgaggaggaccaggactgggtcaacctctactacgagatgcccgac
tttgacccggcccgcatctccccctggctgctgcgcatcgagctggaccgcaagcgcatg
acagaccgcaagctgaccatggagcagatcgccgagaagatcaatgcgggcttcggcgat
gacctgaactgcattttcaatgatgacaacgctgagaagctggtgctccgcatccggatc
atgagcagcgaggaaagcaagttcggcgaggaagaggagcaagtggacaagatggaggac
aacgtcttcctgcgctgcatcgagtccaacatcctgacggacatgaccctgcaaggcatt
gagcagatcagcaaggtgtacatgcacctgcctcagcaagacaacaagaagcgcatcatc
atcacagaggagggcgagttcaagcccatccaggagtggcttctggagacggacggcacc
agcatgatgaaggtactgagcgacaaggaggtggaccccgtccgcaccttctccaacgac
atctgtgagatcttccaggtgctgggcatcgaggcggtgcgcaagtcggtggagcgggag
atgaaccacgtcatctccttcgacggttcctacgtcaactaccgtcacctggcgctgctc
tgtgacgtcatgacggccaaaggccacctgatggccattacccgtcatggcatcaaccgg
caggatgtgggcgccctcatgaggtgctcctttgaggaaacggtggacatcctgatggac
gcagccgcccacgcagaggtggaccacctgaaaggcgtgtcggagaacatcatgctcggc
aagctggccggggtgggtacgggttccttctccctgctgctggacgccgagaagtgcaag
cacggcatggagatccccatgggcatgggcggtggcctcggtggtatgacagggatgttc
tttggagcggccgcatcgccctctgctagcatgtcacctcagatgaccccttggaatcaa
ggagcaactcctgcttacggtgcttcgtggtcacctatgggaagcgggatgacccctgga
gcagcaggcttcagcccgtctgctcagtcggatgccagcgggttcagccctggctacagc
cctgcctggtccccacagcccagctctccaggttccccaggcccaactagcccttacatc
ccatcaccggccagcccaatgtcacccagttactccccagcatcgccgtcgtacatcact
ggctcgccagccacccctcagagtcctggctactcacctacgagtccttcctactcacca
tccagtcctggctactcacccacgagcccaagctactctccgaccagcccgagctattcc
ccaacaagtccgagctactctccaaccagccccagctactcgccaacgagtccgagctac
tcgcccacaagtccgagttacagcccaaccagtccaagttacagcccaaccagcccgagt
tacagcccaacatcaccgagctactccccaacaagcccttcttacagtccaacttcgccc
agctactccccaacctcgcccagttacagccccacttcgcccagctacagtcccacctca
ccaagttactccccaacgagtcccagctactcacccagctcgccaaagtactccccgacc
agtcccagctactcacccaccagcccgagcttctcagccaagtcgcccagctacagcccg
acatcacccagttactccccaacctcgcccagctacagccccacatcccctgcggggtac
tcccctcagtcgcccagttacagtcctggatcacccagctactccccctccagccccaag
tactcgccttccagcccttcctacagcccgacgtcacccagctacagtgggtcccacttc
accccgacctcgcccgagtacagccccaccagccccacgtactccccagccagccccagc
tactccccgtccagtcccaagtactccccgtccagccccaagtactccccggccagcccc
acctactccccgcagacgcccaagtacagccccacctccccctcctactccccgacgagt
cccaagtacagccccagctcgccctcttactcgccgacgagcccccaggattcctactcg
cccatgtcgcccggttactcccctgcctccccttcctacagcccaagcagccccgacatc
gaagctgatgattag
DBGET
integrated database retrieval system
