Acanthaster planci (crown-of-thorns starfish): 110981332
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Entry
110981332 CDS
T05078
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
aplc
Acanthaster planci (crown-of-thorns starfish)
Pathway
aplc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aplc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110981332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aplc03041
]
110981332
Enzymes [BR:
aplc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110981332
Spliceosome [BR:
aplc03041
]
Complex C
Other components
Step II factors
110981332
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Flavi_DEAD
nSTAND3
ResIII
SRP54
AAA_16
cobW
AAA_23
ATPase_2
Sigma54_activ_2
ABC_tran
DUF7014
Motif
Other DBs
NCBI-GeneID:
110981332
NCBI-ProteinID:
XP_022094525
UniProt:
A0A8B7YPZ8
LinkDB
All DBs
Position
Unknown
AA seq
1248 aa
AA seq
DB search
MMSHGDESIHRLEGSSDQVGGLIIKKKTTAKEDDKNSFKLPQHRSSLLGLDRLAAAKRKE
REDLEEETKKRSKVTSYRDDWEDGDDDVEEEDYEKESSHKSSHKRQYRAPRIETPSHPGG
VSNAVRDRQRQREKDSRKGGVYASSSKEQEGKNRRDRERDRDRDRRDRDRHRDRHRDDDR
ERRRDRDSERSSRSVRSERSDWERTPSRDDEPGTPRISRGIVTPSRSSWDEDEDSIPRKA
PSAWDFPTPQVPSGRGRERSERGDRSVRSERRSERSSRSSRDRDLDKRGGSRRPVEDTPM
MTPTHRYNSWASNRKRMGITPKISGGDTVERFASESERQEWEEEQKRLDRQWYGSDEGYD
EANNPFASIPEEYTQKREKELLNKASKRMSAQQRQISKDNEKWETNRMLTSGVVTRVDFD
EDFEEDNVKRTHLLVHNIVPPFLDGRIVFTKQPEPVVPVRDTTSDLAQIARKGSLLVRKY
REQKERKKAQHKDWELAGTKLGNLIGIEKQDDKGSEDVNYKSQQQFAEHMKEKTEAASDF
AIKKSLKQQREYLPIYAIRNELLNIIRDNPVVVIVGETGSGKTTQLTQYLHEDGYSKYGI
IGCTQPRRVAAMSVAKRVSEEMGVALGEEVGYAIRFEDVTCEKTIIKYMTDGILLRESLR
ESDLDHYSAIIMDEAHERSLNTDVLFGLLREVVARRQDMKLIVTSATMDSDKFAAFFGNV
PVFEIPGRTFPVDTMFSKTAVEDYVDASVKQAIQIHLQSSPGDILVFMPGQEDIEVTCDV
IAERLGELDNAPQLAILPIYSQLPSDLQAKIFQKAPDGVRKCVVATNIAETSLTVDGIMF
VVDAGYCKLKVYNPRIGMDALQVYPISQANARQRSGRAGRTGPGQCYRLYTERAYKNELL
VTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPQDNMLNSMYQLWILGALDNTGSL
TPLGRQMVEFPLDPALSKMLIVAVEMGCSTEVLTIVSMLSIPSIFYRPKGREEESDQARE
KFAVPESDHLTYLNVYQQWKNNHYSSIWGNEHFIHVKAMRKVREVRQQLKDIMEQQGLNL
VSCGTAWDIVRKCICSAFFHQGARLKGIGEYVNIRTGMPCHLHPTSALFGMGFTPEYIIY
HELVMTSKEYMQCVTAVEGEWLAELGPMFYSVKEAGKSRQANRQMAKANLTAMEEEMQLA
TEELKARKEHEEQKRVTSIRRLQISTPGRKEPKTPASVRRKTPSSFGL
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcgcacggtgatgagtcaatccaccgtcttgagggatcctcagaccaggtggga
ggactcatcatcaagaagaagaccacagccaaggaggatgacaaaaactccttcaagtta
cctcagcaccgctcctccctcctgggcctggatcggctggctgctgccaagaggaaggag
agggaggaccttgaggaggagactaagaagaggtcaaaggttacctcctacagggatgat
tgggaagatggagatgatgatgtagaggaggaggattatgagaaggaatcctctcacaaa
tcctctcacaaaaggcaataccgagccccccgtattgagaccccctcccaccctggggga
gtgagcaatgctgttagggacagacaaagacagcgagagaaggatagccggaagggcgga
gtctatgcctcctcctccaaagaacaggaggggaagaatcgacgagaccgggagagagac
agggacagagacaggagagatcgtgacagacaccgagacagacacagagacgatgacagg
gagagaaggagggaccgcgactcggagaggagcagtcgtagcgttcgcagtgagaggagt
gactgggagaggacaccaagtagagacgatgagccaggaacgccgagaatctccagaggg
atagtcaccccatcacggtccagttgggacgaggacgaagacagcattccccgcaaagcg
ccctcagcctgggacttccccacgccccaggtgccgtcgggtcggggcagggagcgcagt
gagaggggagatcgcagtgtgcgcagcgaacgccggagcgagcgcagttcccggagcagc
cgggacagagacttggacaaaaggggtggatccagacgtccagtagaggacacccccatg
atgacgccaactcaccgctataactcctgggctagtaacagaaaacgcatgggaatcacc
ccaaagatatccggaggagacacagtggagcgatttgcatctgaatcggaacgccaggag
tgggaggaagaacagaagaggctagatcggcagtggtatggatctgacgaaggctacgat
gaagccaacaatccgtttgcctccatcccagaggagtacacgcagaagagggagaaggaa
ctccttaacaaggcctccaagagaatgtcagctcagcagagacagattagcaaggacaat
gagaaatgggagaccaatcggatgctgaccagtggagtggtgacccgagttgactttgat
gaagactttgaagaggacaacgtgaaacgcacgcatttgttggtccacaacattgtgcca
ccatttcttgacggacgcatcgtgttcaccaagcaaccagagcccgtcgtccctgtcaga
gatacgacctctgacctggcccagattgccaggaaggggtccctgctcgtccgcaagtac
cgagagcagaaagagagaaagaaagcccagcacaaggactgggagctggccgggactaag
ctcgggaacctcatcggaatcgagaaacaggacgacaaggggtcggaggacgtcaactac
aagtcacagcaacagtttgccgagcacatgaaagagaagacagaggccgccagcgacttt
gccatcaaaaagtcgctgaagcagcagcgagagtacctgcccatctacgccatcagaaac
gagctgctcaacatcatcagggacaaccccgtcgtcgtgattgtcggggaaacaggatct
gggaagacgacacaacttacgcagtacttgcatgaggatggttacagtaagtatggcatc
attggctgtactcagcccaggcgtgtggctgccatgtccgtggccaagcgcgtcagcgaa
gagatgggtgtggctctaggggaggaggtgggatatgccatccgatttgaagacgtgact
tgtgagaaaactataatcaagtacatgactgacggtatcctgctgagagaatccctacgc
gagtcagacctggaccactacagcgctatcatcatggacgaggctcacgaacgctccctg
aacaccgatgtgctgtttggactactccgagaggtggttgctaggagacaagacatgaag
ctcattgtcacatcagccacaatggactcggacaaatttgcggccttctttggaaatgtt
cccgtctttgagattcccggtaggacgtttcctgtcgacaccatgttcagcaagaccgcg
gtggaggattacgtggacgcgtccgtcaagcaagccatccagatccacctccagtcatcc
cccggtgacatcctggtcttcatgcccggccaggaggacattgaggtcacctgtgatgtc
atcgcagagagactaggggagctggacaacgcccctcagttggccatcctgcccatctac
tcccagctgccatcagacctgcaagccaagatcttccagaaggccccggacggcgtccgc
aagtgcgtggtggctaccaacattgccgagacatcgctgacagttgatggtatcatgttt
gtagtggacgctggctactgtaagctaaaggtttataacccacggatcggtatggacgcc
ctgcaggtgtaccccatcagccaggctaacgcccgacagagatcaggtagagctggaaga
acaggaccagggcagtgctacagactctacacggagcgagcatacaagaatgaactgcta
gttaccacggtgccagagatacagagaaccaacctggccaatgttgtgctgctgctgaag
tcacttggagtccaggacctcttgcagttccattttatggacccaccccctcaagacaac
atgctcaactctatgtaccagctgtggatcctgggagctctagacaacacgggttccctc
acccctctaggaagacagatggtggagttccctctcgaccctgccctctccaagatgctg
attgttgccgtggagatgggatgcagtactgaagtcctaaccatagtgtccatgctgtcc
atcccttcaatcttctaccggccaaagggcagggaagaagagagtgaccaggccagagag
aagtttgccgtgcccgagagtgaccatctgacctacctcaatgtctaccagcagtggaaa
aacaaccattattcatcaatatggggcaatgaacattttatccacgtcaaagcgatgcgc
aaagtacgcgaggtgcgccagcagctgaaggacatcatggaacaacagggactgaatttg
gtatcctgcggcaccgcctgggatattgtgcgcaagtgtatctgctcagccttctttcac
cagggcgccagactgaagggtatcggcgagtatgtgaatattcgcacaggcatgccgtgc
catcttcacccgactagtgccctctttgggatgggtttcaccccagagtacatcatctac
cacgaactggtcatgacatcaaaggagtacatgcagtgtgtgacggctgtagagggagag
tggcttgccgagttgggtcccatgttctacagcgtcaaggaggctggcaaatccagacag
gccaatcgtcagatggccaaggccaacttaacagccatggaggaagagatgcagctggcc
actgaagagttgaaggccagaaaagaacacgaggaacagaagagagtgacgtccattaga
aggttacaaatttccactccaggaaggaaagagcccaaaactccagcatctgtgcgaagg
aaaacgccctcatcctttggtctctga
DBGET
integrated database retrieval system
