Acanthaster planci (crown-of-thorns starfish): 110983149
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Entry
110983149 CDS
T05078
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
aplc
Acanthaster planci (crown-of-thorns starfish)
Pathway
aplc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aplc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110983149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aplc03021
]
110983149
03019 Messenger RNA biogenesis [BR:
aplc03019
]
110983149
Transcription machinery [BR:
aplc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110983149
Messenger RNA biogenesis [BR:
aplc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110983149
U7-dependent histone pre-mRNA processing factors
110983149
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
DUF7928
Motif
Other DBs
NCBI-GeneID:
110983149
NCBI-ProteinID:
XP_022097842
UniProt:
A0A8B7YYS5
LinkDB
All DBs
Position
Unknown
AA seq
688 aa
AA seq
DB search
MASKRRSDSQVPAEESDRLIIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGREGLDSL
PFFDMIEPEEIDMLLISHFHLDHCGALPFFLKKTKFQGRIFMTHATKAIYRWLLSDYVKV
SNISAEKMLYTDNDLQNSMDRIETINFHQEIEASGVKFWCYNAGHVLGAAMFMIEIAGVK
ILYTGDFSRQEDRHLMAAEIPNIKPDVLITESTYGTHIHEKRDEREARFTGTVHDIVNRG
GRCLIPVFALGRAQELLLILDEYWANHPELHDIPVYYASSLAKKCMSVYQTYINAMNEKI
RRQIAISNPFVFKHISNLRGMDHFDDVGPSVVMASPGMMQSGLSRELFENWCTDRRNGVI
IAGYCVEGTLAKTIMQSPEEITTMNGQKLPLKMSVDYISFSAHTDYEQTSEFIRALKPPH
IVLVHGEANEMNRLKTALLREYEDDEETHIQIHNPRITQAVELYFRGEKMAKVMGSLAAS
KPTKDHRLSGVLVKRNFNYHIMAPSDLAEYTDLAVSTLTQRLSVAYTAPLSLLTHYLTQL
SGDVEYVEVYNKPALRIFNAVTIVHEPAKGMVTLEWVANAVNDMYADAVMAVVVKVSTDP
NAQKLKHIPPKNDIDQFSQRLTRLLEDIFGSGAVAHDEKTDLITVSIEGKEAQINTDLLE
VKTEDKSMFQMINTAIQRLHSAIEPTQS
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaagagaagaagcgattcacaggttcctgcggaggaaagtgaccgtctcatc
atccggccactaggggcggggcaagaggtgggccggtcctgcatcatgctggaatttaaa
ggcaagaaaatcatgttggactgtggcattcacccgggcagggagggcttggattcgtta
cccttcttcgacatgattgagcccgaagagattgacatgctgctgataagccatttccat
ctggaccactgcggcgctctcccgttcttcctgaagaagaccaaattccagggtaggatt
ttcatgacacacgccaccaaggccatctatcgctggctcctctccgactatgtgaaagtc
agtaacatctcggccgagaagatgttgtacacagacaacgacctacagaatagcatggac
cgcatcgagaccattaacttccaccaggagattgaagccagcggggtgaagttctggtgc
tacaacgctggccacgtgctcggggctgccatgttcatgattgaaattgcaggtgtcaag
attctctacacaggagatttctccaggcaggaggacagacatctaatggctgccgaaatc
cccaacatcaaaccggacgttctcatcaccgaatcaacgtacgggacccacatccacgag
aaacgagatgagagggaagcgcgcttcacggggactgtgcacgacatcgtcaaccgagga
gggcgctgcctcattcccgtctttgccctgggccgggcgcaagagttacttctgatcctg
gatgagtactgggccaaccatcctgaactgcatgacattccagtgtactacgcgtcgtca
ctcgccaagaagtgcatgtcagtctatcaaacctacatcaacgctatgaatgagaaaatc
cgcagacagatcgccatcagcaacccgttcgtcttcaagcacatctccaacctacgcggc
atggatcactttgatgacgtgggcccgtcagtggtcatggccagcccgggcatgatgcag
agcggactgtcacgggagctgtttgagaactggtgcaccgaccgacgtaacggcgtcatc
attgcgggttactgcgtcgaagggaccctcgctaagaccatcatgcagtcaccggaagaa
atcaccaccatgaacggccagaagcttcctctgaagatgtccgttgactatatctctttc
tcggctcacacggactacgagcagactagcgaattcatccgagcgctcaagccccctcac
attgtcttggtccatggcgaagccaacgagatgaaccgattgaagaccgccctcttgaga
gagtacgaggatgacgaggaaacacacatccagatccacaatcccaggattacgcaggcc
gtggagctgtacttccgaggagagaagatggccaaagtcatgggtagcctggcagccagc
aagcccaccaaggaccaccgtctgtccggcgtcctggtcaagcgcaacttcaactatcac
atcatggcaccctccgatctggccgagtacaccgacctggcggtcagcacgctcacccaa
cgactgagcgtagcctacaccgccccgttgtccctcctgacccactacctgacccaactg
tctggtgatgtggagtacgtagaggtatacaacaagccagcactgcgaatcttcaacgct
gtcactatcgtccacgaaccagccaagggcatggtcacgttagagtgggtggcaaacgcc
gtcaacgacatgtacgcagatgccgtgatggccgtcgtcgtcaaagtgtcaactgatcca
aatgcacagaagctgaagcacatcccgcccaagaatgacattgaccagttcagccagcgg
ctgaccaggctgctggaggatatctttgggtcgggagccgtcgcccacgacgagaagacc
gacctcatcaccgtcagcatcgaaggcaaagaggctcagattaacacagacctgctggaa
gtgaagacagaagacaagtctatgttccagatgatcaacacggctatccagcggttacac
agtgccatagaaccaacccagagctga
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integrated database retrieval system
