Acanthaster planci (crown-of-thorns starfish): 110984281
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Entry
110984281 CDS
T05078
Name
(RefSeq) 5'-3' exoribonuclease 1-like
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
aplc
Acanthaster planci (crown-of-thorns starfish)
Pathway
aplc03008
Ribosome biogenesis in eukaryotes
aplc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aplc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
110984281
09123 Folding, sorting and degradation
03018 RNA degradation
110984281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aplc03019
]
110984281
03009 Ribosome biogenesis [BR:
aplc03009
]
110984281
03016 Transfer RNA biogenesis [BR:
aplc03016
]
110984281
03036 Chromosome and associated proteins [BR:
aplc03036
]
110984281
Messenger RNA biogenesis [BR:
aplc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110984281
mRNA degradation factors
5'-3' decay
5' exonucleases
110984281
Ribosome biogenesis [BR:
aplc03009
]
Eukaryotic type
Pre-60S particles
RNases
110984281
Transfer RNA biogenesis [BR:
aplc03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
110984281
Chromosome and associated proteins [BR:
aplc03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110984281
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
110984281
NCBI-ProteinID:
XP_022099990
UniProt:
A0A8B7Z5C3
LinkDB
All DBs
Position
Unknown
AA seq
2107 aa
AA seq
DB search
MCNLFALRTYIYIRVLLIAEKSLTNVASVRKDNCFQISVHKMGVPKFYRWISERYPCLSE
VVKENQIPEFDNLYLDMNGIIHPCSHPNDEDVHFRITEEQIFEAIFHYIEVLFRIIKPRK
VFFMAVDGVAPRAKMNQQRGRRFRSAREAEERERQALAKGETLPAEKRFDSNCITPGTPF
MVRLQEQLKYFVRQKLTKDPMWQGLTVYLSGHETPGEGEHKIMDFIRSEKVRKDYDPNTR
HCLYGLDADLIILGLISHEPHFSLLREEVRFGKIANQKRPTAPEETTFHLLHLSLMREYL
EIEFSALKPQIDWFDVECIIDDWVLMGYLVGNDFIPHLPDMHISHNALPMLFKAYIEILP
SLGGYINEHGTLNLPRFEKYLVHLSKFDREKFEETFSDLSFFAGKTDIRAWKSSRVEAKK
EKEKERRAAKANSNQYALLDNFDEVMGLKLASGSEVAGQSPDSSQDADSSDQEDGDTFEE
EFKAHKSAYYNSKFEIDNITEFYPYHYAPYMSDLQGISNLDLKYEKGEPFLPFQQLLGVL
PAASKDLLPEPYQKLMTMENSPIIDYYPLDFDTDLNGKLQQWEAVVLIPFIDEERLLAAM
DSVSMHLTDEERSRNQHGPHLKHTYDKTLNYKYLSSLPGHFPDINACRVRYEELDKDIFH
LDPSMLQRGLRPGVKTGVYFPGFPTLHHLKFRTKLSKEEIKVFQQNSRGESIILTIKTEN
ADVTAEDVISEVFGKSCFAEWPHLKEVKVVAVADDTTRFELAESKQRSDQQAEKPSVKKL
DMSDGDAAAWVKDIKAIQDRYHKRKGVKIGPSYVLVYACPLMGRRYVSGHSGVVTLEKQW
SDTPVAYAYQMMVKDIAVHDSTFQQFKTLEEVFPKQSNCFMLGAPNYGCQGSVVDVEDGR
VRVTLSCPVEPDLNHLRNSQSHYEIQYLPAHILAQRLGLTSLIISRLSGSIFVGRGSKHS
SSVGASNNFNIGLNLKFNKTNQEIQGYSKKDESGTWLYSTKVIDIIRDYMAKFPEVFLRI
SKNPRAEAFFEDDLFDGQPGRMKELQDFIKALPCAKVSKVDVGLKNLDEPIIKLIEAEVK
KVAGLKVRKQKLCVRPHLLYKPLHYMGNLIPDLQVEHELFDRVINVKEGHTVPLGVRGVI
IGIQPGDTVLDCIYEIVFDEEFPGGLVIRCTGNRGYRLPTTAIINISYGMRKEQGQQQSN
KPTAVVKPQVFPQPNARTQSRGWYSDIIGRLGASLEQSCQSQRQKQQQRQSHTQVQSKPT
AAINYKEALSQKGSVKQETEQSSNSQASLPMKILTRSGPKVTARSPSKEPLPGKSSQSQR
IPPSFQKQEGTDSRKNTAKTEKVGQGQRKDAVSKSEVSTTRIRDKALSEEIRKIRSREDK
KAAEPEQSPANEVDEFAIMWQNLQKGSNNSGTSSPMTEDSAPDKESSPSDELTSPLASGG
QTPLSEEDMTGPSVQMQLALSALPKMEAPGPKVTGGETIVEEGDEEFEGEEFEVDEEARM
TPRTYAKSGTEELCRMLNISSVSDGDGTTKDIALPHSVVIEASTGKKQYGIPLTLDQLFA
GASLNNPPNSISPAPITPTSQASVPVPGGGSQPTPLHPHPLAQVSGPHPGLMKGPESSHP
GTVPTQPRPLPQAPGHATIPVKVGSHGVTFQPAYFPQGAVSPARLTVGNYSPQSGASPVQ
LLPHHTFQGTPLVTVNPGKPGMQHPASLMVQPVGQTPQQQLGVQQQAQQPIRMQGPGHQS
QAGVVKPVPTHADPHSPAYPQQQPTSVSANENTSNARLYPASAPQQQSASVAQGHTPGFH
VVTPRPFQTAPVPIAAPGRSHPGPQVMGSPSQPPNLRPRVPFPGQQHGQPPPQGFPARPQ
NAFEALLMWCHQRGLPQPLCHYQRNNTTGQVRGMVQLANGQQFFGPDCPSDVIAVDAAAH
MAMTNLTSQSPRSPMMQQMRPTTRPTLGPMGPPSGPMIHTSGPNPFVPLQVTKQLNSPQR
LTSIEAEATSGTTPPRQQMEYPAQAPPSQGAPPSSRVDLAATDQSGIKDNSHQSSRRELD
FGSSTVNTVAHSTEVVASVEHRKPSIDETLGAVHSERRASTGGPARHRRVSSKAKLAINF
GGKPEQD
NT seq
6324 nt
NT seq
+upstream
nt +downstream
nt
atgtgcaatctgtttgccttgcgtacgtacatatatatacgtgtgttgctcattgctgaa
aagtccctcaccaacgttgcttcagtaagaaaggacaattgttttcaaatttcagttcac
aaaatgggtgttcctaagttttatcgctggatcagcgagcggtatccgtgcttgagtgaa
gtagtcaaggagaatcagattcctgaatttgataatctctacctggacatgaatggtatc
atccacccgtgctcgcatcccaatgatgaagatgtccacttccgcatcactgaagagcaa
atctttgaggccatattccattacattgaggtgctgtttcgcatcatcaagccccgtaag
gtgttcttcatggcggtggacggcgtggcccccagggccaagatgaaccagcagcggggg
aggcggttccgctcagccagggaggcggaggagcgggagcggcaggcccttgccaagggg
gaaacgctgccggccgagaagcgctttgactccaactgcatcacccccggcacgcccttc
atggtgcgcctccaagagcaactgaagtactttgtgcggcagaagctgaccaaggatccc
atgtggcaagggctgacagtttacctctcagggcacgagactcctggtgaaggggaacac
aagattatggacttcatacgctcagagaaagttcgaaaggactatgaccctaacaccaga
cactgcctctacggcctagatgcagacctgatcatactgggcctcatatcccatgaacct
cacttctcccttctccgcgaggaggtgcgattcggcaagattgccaatcagaagcgacct
acagccccagaagagacgacctttcacctcttgcacttgtctctaatgagggagtacctg
gaaattgagttcagtgcactcaagccgcaaatcgactggtttgatgtggaatgcatcatc
gacgactgggtgctcatgggatatctcgtcggtaacgacttcatccctcacttgcctgat
atgcacatatcccacaatgctctgccgatgctgttcaaggcctacatcgagatcctgccc
tcgcttggtggttatatcaatgagcacgggacactaaacctgccccgttttgagaaatac
ctggtccatctatccaagtttgacagggagaagtttgaggagacattttccgacctttcc
ttctttgctgggaagacggacattagagcctggaaaagcagccgggtagaagccaaaaaa
gaaaaggagaaagaaagacgcgctgccaaggccaactccaaccaatatgctctgctggac
aactttgatgaagtgatgggtctcaagctggcctctgggtcagaggtcgctggtcagtca
cctgactcaagtcaagatgcagattcctctgatcaggaggatggtgatacgtttgaagaa
gagttcaaagctcacaagagtgcctactataacagcaagtttgaaatagacaacatcaca
gagttctacccttaccactacgccccttacatgtcagacctacagggaataagcaacttg
gatctcaagtacgagaaaggtgagccgttcttgcccttccagcaacttctgggtgtgctg
cctgcagcaagcaaagacttgcttcccgagccataccagaaactgatgaccatggaaaac
tcccccattattgactactacccattggactttgacaccgacctcaatggcaaactgcaa
cagtgggaagcagtggtgctcattccattcatcgatgaggaacgtctcctcgcggcgatg
gacagcgtcagcatgcacctgactgatgaggaacgaagtcgtaatcagcatgggccccac
ctcaagcacacctacgacaagacactcaattacaaatacctgtcctctctacctgggcac
ttccccgacatcaatgcctgccgggtcaggtatgaggagttagacaaggacatctttcac
cttgatcccagcatgcttcaacgaggcctgcgtccaggcgttaagacaggtgtttacttc
cccggcttccccacgttgcatcatctgaaattcagaaccaaactcagcaaagaggaaatt
aaagtcttccagcaaaacagccgaggcgagagcatcattcttaccatcaaaacagagaat
gctgatgtgacggcagaggatgtaatcagtgaagtgtttggtaagtcctgctttgctgaa
tggccgcatctgaaagaagtcaaagtggtggctgtggcagatgacacaactaggtttgaa
cttgctgagagcaaacagaggagtgaccaacaggcagagaagcccagtgtcaagaaactt
gacatgtccgatggggacgctgctgcctgggtcaaagatatcaaggccatacaagacaga
tatcacaagaggaaaggagtgaagatcggtccgtcatacgtcttggtctacgcctgccct
ttaatgggaagacggtatgtgagtggacacagtggagtggtcactctggagaagcagtgg
tcagatactccggtagcctacgcatatcagatgatggtcaaggacatagccgtgcatgac
tcaactttccagcagttcaagaccctggaagaggtcttccccaagcagtctaactgcttc
atgctgggagcgcccaactacggctgccagggaagtgtggtggatgtggaggatggacga
gtccgtgttacgctctcctgtcctgtagagccagatttgaatcacctcaggaactcacag
agccattacgagattcagtacctccctgctcacatcttagcccagcgtcttggcttgaca
tctctcatcatctcccgtttatctggcagcatctttgttggcagaggatccaagcacagc
tcctctgtgggtgcctcaaataacttcaatatcggcctcaatctgaaattcaataagacc
aaccaggagatccagggttactctaagaaagacgagtcgggaacatggttgtactcaacc
aaggtcatagacatcatcagagactacatggcaaagtttccagaagtgttcttgcgcatt
agtaagaatccaagagcagaggcgttctttgaagatgacctgtttgatgggcagcctggt
cgaatgaaagagctacaggacttcatcaaggccctgccgtgtgccaaggtctccaaggta
gatgtgggcctgaagaacctggatgagcccatcatcaagctgattgaggccgaggtgaag
aaggttgctggattgaaagtcagaaagcaaaaattgtgtgtccgaccacaccttctctac
aagcctcttcattacatgggcaacttaatcccagacctgcaagtggagcacgaactgttt
gatcgcgtcatcaacgtcaaggagggccacactgtgcctctaggcgtacgaggagtcatc
attggaatacagccgggtgacactgtgcttgactgtatctacgagattgtgtttgatgag
gagtttcctggtggtctggtgatccgttgcaccggtaaccgtggttacaggctcccgacc
acagccatcataaacatatcgtacgggatgcgcaaggaacagggccaacagcagagcaac
aagccaacagccgtcgtcaaaccacaggtattcccgcaacccaatgcccgaacgcagagt
cgcggctggtactcggacataatcggtaggctgggtgcttcacttgagcagtcttgccag
agccagcgacaaaaacagcagcagcgccagtcacacacacaggttcagtccaagccaacc
gcagcaatcaattacaaggaggcgttatcacagaaaggtagtgttaaacaagagacggaa
cagagttctaattcacaggcatcactgcccatgaagatcctgacacggtcaggacccaag
gtgactgcgcgttccccctctaaggaacctctcccggggaagagctcacagtctcaaaga
atccctccgagcttccagaagcaggaggggacagacagcaggaaaaatacagcaaagaca
gaaaaggtcggacaggggcagaggaaagatgcggtctccaaatcagaggtgtcaacaacg
agaatccgtgataaggctctcagcgaggagattcgcaagattcgaagtcgggaagacaag
aaagctgctgagccagagcagtccccggccaacgaggtggacgagtttgccatcatgtgg
cagaacctgcagaaagggtctaacaacagcggcacctcctcccccatgactgaggactcc
gcccctgacaaggagagcagcccgagtgatgagctgacctcccccttggcctcgggaggc
cagacacctctgtcagaggaggacatgacggggccctccgtccaaatgcagctggccctg
tctgcactgcccaagatggaggctcctgggccaaaggtcacagggggtgagaccattgtt
gaggaaggggatgaggaattcgagggtgaagagtttgaagtagatgaagaagcacggatg
actccaagaacatatgcaaagtctggaacagaggagctgtgtcgaatgctgaacatttcc
tcggtgtccgatggcgacggtacaaccaaggatattgctttgcctcactctgtcgtcata
gaagcgtcaacaggcaagaagcagtatggcataccactcacccttgatcagctctttgca
ggtgccagtctgaacaatcctccaaatagtatatcaccagcgccgattactccaaccagt
caggctagtgtaccagtgcctggtggagggagccaacctacaccactccatccccacccc
ctggctcaggtgtccggtccccaccctggactcatgaagggtcccgagtcctctcaccca
ggcactgttcccacccagccaaggccattaccccaggccccaggccacgctacgatccct
gtaaaggtgggatctcacggtgtcacgtttcagccagcctactttcctcaaggtgctgtg
tctcccgcgaggttgactgtagggaattactcaccccagtcaggtgcctcgcctgtccag
cttttgccccaccacacgtttcaagggactcctttagttactgtcaatcctgggaagcca
ggcatgcaacaccctgcaagcttaatggtgcagcccgttggacaaacaccacagcagcag
ttgggagttcagcagcaggcgcagcagccaatcagaatgcaaggtcctggccaccaatcc
caagccggtgtggtgaaaccagtacccactcatgcggatccccactcccccgcatatcct
cagcaacagccgacaagcgtctctgccaatgagaacacgtccaacgccagactgtatccg
gcatcagcacctcagcagcagagtgcaagtgtggcccaaggacacacccctggatttcac
gttgtcacgccgcggccatttcaaacagccccggtgccgatcgcagccccggggagatcg
cacccgggcccccaggtgatgggctccccatcgcaacctcccaacctccgacccagggtt
ccgttccctgggcagcagcatggacaacctccaccccagggcttcccagcgaggccccag
aatgccttcgaggcgttactaatgtggtgtcatcaaaggggtctgccgcaaccactgtgc
cattaccagagaaataataccacgggtcaggtacggggtatggtgcaattggctaacggt
cagcagttctttggtccagactgcccatcagatgtcatagccgtagatgctgcagcccac
atggcaatgacaaacttaacatcgcaatcaccaagaagtcccatgatgcaacagatgagg
cctaccacgcgcccaacactcggtccgatgggtccaccatcaggacctatgattcacacc
agtggaccaaacccgttcgtgcctctgcaggtaaccaagcaactaaattccccacagaga
ttgacatctatagaggcagaagctacatcaggtacgacaccccccagacaacaaatggaa
taccctgctcaggctccaccgtcccagggtgcacccccttctagcagagtggacctggcc
gcaacagaccaatcagggatcaaggataattcccaccaaagctcccggagggagctcgac
tttggcagcagtaccgtcaacaccgtcgcacacagcactgaagtggttgcgtctgtggag
catcgaaaaccaagcatagatgaaacattgggagcagtccattcagagcggagggcgtcc
actggtggtcctgccagacaccgccgagtttcctccaaggccaaacttgccattaatttt
ggtgggaaacctgaacaggattga
DBGET
integrated database retrieval system
