Acanthaster planci (crown-of-thorns starfish): 110984794
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Entry
110984794 CDS
T05078
Name
(RefSeq) spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
aplc
Acanthaster planci (crown-of-thorns starfish)
Pathway
aplc03013
Nucleocytoplasmic transport
aplc03015
mRNA surveillance pathway
aplc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aplc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110984794
09122 Translation
03013 Nucleocytoplasmic transport
110984794
03015 mRNA surveillance pathway
110984794
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aplc03019
]
110984794
03041 Spliceosome [BR:
aplc03041
]
110984794
Enzymes [BR:
aplc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110984794
Messenger RNA biogenesis [BR:
aplc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110984794
Spliceosome [BR:
aplc03041
]
Complex C
Other components
EJC/TREX
110984794
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110984794
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Thioredoxin_6
Motif
Other DBs
NCBI-GeneID:
110984794
NCBI-ProteinID:
XP_022100992
UniProt:
A0A8B7Z5S9
LinkDB
All DBs
Position
Unknown
AA seq
435 aa
AA seq
DB search
MAENDVEQELLDYEEEEHDATQEAGGDATAQTAIKKDVKGTYVSIHSSGFRDFLLKPELL
RAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQLEPVSGQVGVL
VMCHTRELAYQIKKEYDRFSKYMKDMQDKVAVFFGGLSIQKDMQRLKTDPPFIVVGTPGR
LLALVRNKSLSLKNIKHFILDECDKMLEQLDMRKDVQEIFRTTPHEKQVMMFSATLSKEI
RPVCKKFMQDPMEVYVDDETKLTLHGLMQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFIK
SVQRCIALCQLLVEQNFPAIAIHRAMQQETRLQNYKLFKDFEKRILVSTNLFGRGMDIER
VNIVFNYDMPENSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNITELP
EEIDMASYIEPDRFQ
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaacgatgttgagcaagagctgttggactatgaagaggaagaacatgacgcc
actcaggaggctgggggtgacgctactgcccagaccgccatcaaaaaagatgtcaaaggc
acctacgtgtccatacacagctcggggttccgggactttttgctgaagccagagttgctg
cgggcgatcgtggactgtggctttgagcacccttctgaagttcaacatgagtgcatcccg
caagccatcctgggcatggacgtcctgtgccaggccaagagcggtatgggaaagactgca
gtctttgtcctgtccaccctgcagcagttggaacctgtatccggacaggttggtgtgctg
gttatgtgccacactcgcgagctggcctaccagatcaagaaagagtatgatcgcttctcc
aagtacatgaaggacatgcaggacaaggtggccgtcttcttcggcggcctgagcatccag
aaggacatgcaacggctcaaaacggatccgccattcattgtggtgggcacaccagggcgc
ctgctagcacttgtgcgcaacaagtccctgtcgctgaagaacatcaagcacttcatcctg
gacgagtgcgacaagatgctggaacagctagacatgagaaaagatgtgcaggagatcttc
cgcaccacgccacacgagaaacaggtcatgatgttcagcgctaccctcagcaaagagatc
cggccagtctgcaagaagttcatgcaagaccctatggaagtttatgtagatgatgagacc
aagttgaccctccacggcctgatgcagtactacgtgaaattgaaggacaatgagaagaac
cgtaaactctttgacctgctggacgtcctggagttcaaccaggtggtcatcttcatcaag
agtgtgcagcgctgcatagccctctgtcagctgctcgtggagcagaatttcccagccatc
gccatccatcgcgctatgcagcaggaaaccaggctgcaaaactacaagctgttcaaagac
tttgagaagcgtatattggtctctaccaacctctttggccgaggcatggacattgagaga
gtcaacattgtcttcaactacgacatgcctgaaaactcggacacgtaccttcacagggtg
gctcgtgcgggccgttttggcaccaagggtctggcaattacctttgtttcggacgagaat
gatgccaaaattctgaatgatgttcaagatcgctttgaggtcaacattacggaactcccg
gaggaaatcgacatggcctcgtacattgaaccagacagattccagtaa
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