Acanthaster planci (crown-of-thorns starfish): 110987500
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Entry
110987500 CDS
T05078
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
aplc
Acanthaster planci (crown-of-thorns starfish)
Pathway
aplc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aplc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
110987500
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aplc00536
]
110987500
Glycosaminoglycan binding proteins [BR:
aplc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110987500
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Endostatin
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
110987500
NCBI-ProteinID:
XP_022105968
UniProt:
A0A8B7ZK18
LinkDB
All DBs
Position
Unknown
AA seq
1822 aa
AA seq
DB search
MELRPALAALRPHLLLVCLVGLLAAPSQTAARKYVQSYDKLDFLILTGYPLPNGVKFAEG
LHGASAFHLEKGTNIGRMAFVIFPTDFTERFSDFTLLVTIKPESEDVGPLLVVTDNLQKT
VILALNVTQAGQDRHRVELVMRDVVTGTPASASFLVPSLTDRWSQFSLSIINDMATLFFN
CSTYDSASLARPEGWRLTIPQSGAVLVGNQGSRLGTVASFEGTIQTLEMSNDPDAAEVRC
DSEPEPPKQRLYKRESSSSALADALITNKDIPAQPSNSMLNGSVHVAMQTSGFNSGGVKS
KYFSGGKEIELGSAVGSGSPAGQGITEEPMISSGMFESSMESFLQTGTPPVSPDFLHGMD
TLSETPDMRTTSVSPPGISKAATDLPSKMETASKASIGMEMVSQTPPGMEMASKVSSGME
TSSKALSGIGPSSLPPDGMGMSSKVTPRMETVTKPFPVLGTTPETHSERTTTESPVTLPA
PTEKPDKFTEAPSVTDAVTSSPPTVLTVTLPTVAPTGPIMSQLPSEMPVMTAKVSSPQMA
SDGQESVVVTTSTPLVKVISETPVSEDKVMSSPADHATPIPTEKATPKPTEKITPTPTGK
AAPSSTVNATPAKTAEATTAPGDKFVSAPTGKAAPTTTDKAMPIPSRTLSSAPVEVVTPT
PIVKVISGSPGVPGVPGEPGPKGDPGIDGKDGAPGTNGKPGPPGTSGEKGEKGDKGSPGI
QGPKGALGDPGLTGPSGPEGLPGVAGPPGDKGVPGDTGPIGPSGSKGQKGEPGIGEPGPP
GQTVTPDPEKIRGAKGEQGKTGVPGPKGEKGDRGGIGLVGPQGDIGLQGAKGEKGDPGEG
LIGLQGPIGPIGPQGPQGDTGPVAELPEFFDLFEGSGLADFRGQRGKKGQDGQPGQAGPQ
GPVGPPGPPGPQGNQGAPGSPGMPGVPGTPGRPGTVGMNYTGLNGLCCRDGLNGSQGPPG
IQGPPGPPGPPGQNGTAGTSGETGKPGVPGIEGPPGMKGDPGIAGPPGPPGPPGKIYIMP
TDATPTAISKLFTDGDASAGSGSPPQITKSPVNGGVDLIPGEPGAPGPPGPQGPPGATGE
RGEIGLLGERGPKGDKGSPGTQGIQGPKGDTGPQGLPGKNGKDGREGPQGKQGERGVGLP
GDKGDAGSMGPSGMPGEQGIMGPPGPPGPPGPPGEVMIDVDGQMSEKGEKGDSGEVGPRG
PRGQKGEAGLNGIPGFHGTKGDRGERGPAGMDGAPGAQGDMGPKGDQGPEGIQGRDGLDG
MPGPRGPQGEKGEPYIPDESALVLLKGMRGPRGPRGPKGHFGIPGRPGNHGDIGPPGLSG
PAGADGVPGIGIPGEKGEQGMKGEKGEPAIIGTALPLASGVKGEKGDPGERGPSGKRGPA
GPQGVPGFPGVNGLNGPKGEPGEPGEEGRPGAMGHPGVDGVPGSTGPQGPKGDKGSPGIG
LKGEQGRPGNPGPPGFGVPGIDGPQGPQGLPGPPGPPGPRGPTGASDLPEGSYIPIEGLP
GPQGFPGIDGEDGAPGEPGRPGDPGLRGPEGRPGEPGPRGFPGPASSGQLTSFSSINDMI
QQAASLTPGTIAFVTDVQELYLRRDNGMTQILLGATFNLDPVPPLLTTSTTTPSPQTHST
TEKVFTIPSTKPGLPGPDLELGDQPMLYMYALNHPMTGDTYSEDSIGGLSGADSHCFQQA
QQARLPGTYRAFLSSRVQDVKSVVNKDYHHLPVANAKDEIMFQSWAGIFNGKGATFDSDK
HIYSFDGKDVMTDDEWDQKYIWHGSYVDGRRMADSYCEEWRTYDGSASGQASPLGSHKLL
GQETQLCSNALVVLCVQVSPDT
NT seq
5469 nt
NT seq
+upstream
nt +downstream
nt
atggaactgaggccagcactggccgccttgcggccacatttactactagtctgcctcgtg
ggtttactggcagcgccctcacagacagcagctaggaaatatgttcagagttacgacaag
ttagactttctgatactgaccggctaccctctacctaatggggttaaatttgccgaaggt
ctccatggggcttcagcttttcatcttgagaagggaaccaacatcggccgcatggcattt
gtcatcttcccgactgatttcacggagcggttctcggacttcaccctcctggtgaccata
aagcctgagtcagaggatgtgggtcccctgctggtggtcacagacaatctgcagaagacg
gtcattctggccctgaatgtgacccaggcggggcaggatcggcaccgggtggagctggtc
atgcgggatgtggtgacgggcacgccggctagcgcctccttcctggtgccctcactgacg
gaccgctggtcgcaattctcgctcagcatcatcaatgacatggccacactcttcttcaac
tgcagcacctatgacagcgcttcactcgcacgtccggagggctggcggctgacaatacca
cagagtggggcggtcttggtcggtaaccagggctccaggctaggaacagtggccagcttt
gagggcacaattcaaacgctggagatgtccaatgacccagatgcggcagaggtgcgatgt
gacagtgagccagagcctccaaagcaaagactctacaaacgtgaatcttcatcctctgct
ctcgccgatgctttaataacaaacaaagacatccctgctcagccatcaaactctatgctg
aacggatccgtgcacgttgctatgcagacctcaggctttaacagtggaggagtaaagtcg
aagtactttagcggtggaaaagaaattgagcttggcagtgctgtaggaagtggttctcca
gctggacaaggcattaccgaggagccaatgatatctagtgggatgtttgaaagctccatg
gagtcattcttacaaacgggaacacctcctgtgtcacctgatttcctccatgggatggat
accttatctgaaacacctgacatgagaacaacatcagtgtctccccctggaatttcaaag
gcagcaaccgatctgccctctaagatggaaacagcctctaaagcatccattggaatggaa
atggtatctcaaactcctcctggaatggaaatggcatccaaagtgtcatctggaatggaa
acatcttccaaagcactctctggaataggaccatcttccttgcctcctgatggaatggga
atgtcatccaaagtcacccccagaatggaaaccgtcaccaaaccattccctgtattaggg
acaactcctgagacacactctgagagaacaaccacagagagtcccgtcactcttccagcc
cctaccgaaaaacctgacaagttcacagaagcaccttctgtgacagacgctgtcacttca
tcaccgccaacagtgctaacagtcacgttaccaacagtggcaccaacagggccaataatg
tcacagttgccatcagagatgccagtgatgacagccaaagtttcatccccgcaaatggca
tcagatggccaagagtcagttgtagtcaccacatctacacctcttgtcaaggtcatctct
gaaactcctgtgtctgaggacaaggtaatgtcttccccagccgaccatgccacacccatc
ccaacagagaaagcgacacctaagccaacagagaaaatcacacccaccccaactggaaag
gctgcaccctcttccacagtcaacgccacacctgccaaaacagctgaggccacaaccgcc
cctggagacaaatttgtgtcagccccaacgggcaaagccgcacccactacaacagacaaa
gccatgcccatcccatcaagaacactgagctccgccccagttgaggtagtcacacctact
ccaatcgtcaaggtgatcagtgggtcaccgggagtaccaggtgtcccgggggaaccaggc
ccaaaaggcgacccaggaattgatgggaaggatggtgccccagggacaaatggaaaacct
ggacctccaggaacatcaggtgagaagggagaaaagggagataaaggaagtccaggtatc
caaggacctaaaggagctcttggtgatccaggcttgacaggccctagtggacccgaaggg
ctaccgggcgtggcaggcccacccggcgacaaaggagtgccaggggatacgggaccaatc
ggacccagtggaagcaaaggacaaaagggtgaacctgggattggagagcctggcccacca
ggccagacagtgacccctgacccagagaaaatccgaggagccaaaggagaacagggaaag
acgggagttccaggacccaaaggagaaaagggtgaccgaggtggtattggccttgttgga
ccccagggagacataggcctccaaggagcaaaaggagaaaagggtgacccaggtgagggc
ttgattggtctacaaggacccattggacctatcggacctcagggaccacaaggggataca
ggaccagttgccgaactaccagagttctttgacctctttgaaggttcaggattggctgat
ttcaggggacagcgtggcaagaagggccaagatggccaaccgggccaagccggtccccaa
ggtccggtgggtcctccgggccctccaggcccccaagggaatcaaggagctcctggttcg
ccagggatgcctggggtaccgggtacgccaggccggcctggtacggtagggatgaactac
acaggactcaacgggctgtgctgcagggatgggctcaatggcagccagggacccccagga
atacagggaccccctggtcctcctggcccacctggccaaaatggaaccgcaggaacttct
ggtgaaactggtaagcctggtgtccctggtattgaaggacccccaggaatgaagggagat
ccaggtattgcaggcccaccaggtccacctggcccaccaggaaaaatctacataatgccc
acagatgccaccccaacagccatttccaaactattcacggatggagatgcctcagctgga
agtggatcaccgccacaaatcacaaagtcacctgttaatggaggtgttgacctcatccct
ggtgagcctggtgctccggggcccccaggaccccagggccctccaggagcaacaggtgaa
cgtggtgagattggcttgctgggtgagaggggaccgaagggagacaagggatctccagga
acccaaggaatacaggggcctaagggagacactgggcctcaaggactaccgggtaaaaat
ggtaaagatggtcgagaaggaccccaaggaaaacagggtgagaggggcgtcggtcttcca
ggagataagggtgatgcaggatccatgggaccatcaggaatgcctggggaacaaggcata
atgggaccacctggaccaccagggccacccggtccacctggggaagtcatgattgatgtg
gatggccaaatgagtgaaaagggcgagaaaggcgactccggagaggtcggaccaagagga
ccccgagggcagaagggtgaagcaggcctgaatggtatacctggtttccatggcaccaag
ggtgatcgtggggagaggggacctgcaggaatggatggtgccccgggcgctcagggtgac
atgggacccaagggtgatcagggacctgaaggtatccaagggcgtgacggattggatgga
atgccaggacccagagggccccagggtgagaagggagagccctacattcctgatgagtct
gcactggtgctactcaaaggaatgcgcggtccaagaggcccacggggacccaagggacat
tttggtatccctggccgaccgggtaaccatggtgacatagggcccccagggttgtctgga
ccagcaggtgctgatggagtcccaggcattggaattccaggtgaaaagggagagcaaggt
atgaagggtgaaaagggagaacctgccattattggcacagctctgcccttggcctccggg
gtaaagggtgaaaaaggagacccaggagagcgtggaccttcagggaaacgaggaccagcc
ggaccgcagggagttccaggcttccccggagtaaatggtttgaatggtcctaagggagaa
ccaggtgaaccaggagaagagggtagacctggtgcaatgggtcatcctggtgtggatggt
gtgcctgggagtactggacctcaaggccccaagggtgacaagggcagtcctggcattggt
ttgaagggtgagcagggtcggcccggtaacccaggcccgcctggctttggcgtgcccgga
attgatggaccccaagggccccagggactcccagggccccctggacccccgggcccccgt
ggaccaactggtgcctccgacctgccagagggctcgtacatacccatagagggtctgcca
gggcctcagggcttccccgggatagacggagaggatggggcaccaggcgaaccaggtcgt
ccaggagaccctgggcttcggggtcctgagggaaggcctggagagcctggcccaagggga
tttccagggccggccagcagcggacagttgacgtctttcagttctatcaatgacatgatc
cagcaagctgcaagcctgaccccaggcaccattgcatttgtcacagatgtccaagagctg
tacttgaggcgcgataatggaatgacacagatattgctcggagccacctttaacctagac
cctgtgccaccacttcttaccacctctaccaccactccatctccacaaactcactctact
accgagaaagttttcacaattccatcaacaaagcccgggcttccaggacctgatcttgaa
cttggcgatcaacccatgctgtacatgtatgctcttaaccatccaatgacgggtgacaca
tacagcgaggacagcataggtggcctatctggtgcagacagtcactgttttcagcaagcc
cagcaagccagactcccaggaacctatcgtgctttcctgtcatccagggtacaggacgtc
aagtctgtggtcaacaaggactaccatcatctgcctgttgcaaatgccaaggatgagatc
atgtttcagtcatgggctggcatcttcaatggaaagggtgcaactttcgacagtgataag
cacatctattcatttgatggtaaagatgtcatgacagacgacgaatgggaccaaaagtac
atttggcatggttcatacgtggatggccggcgaatggcagacagctactgtgaggagtgg
cgcacatatgacggcagcgccagtggtcaagccagcccactgggcagccacaagctccta
ggccaagagacacaactatgcagtaatgccctggtggtgctatgtgtacaggtatcaccg
gacacttaa
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integrated database retrieval system
