Acanthaster planci (crown-of-thorns starfish): 110987536
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Entry
110987536 CDS
T05078
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
aplc
Acanthaster planci (crown-of-thorns starfish)
Pathway
aplc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aplc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
110987536
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aplc00536
]
110987536
Glycosaminoglycan binding proteins [BR:
aplc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110987536
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
GH131_N
Motif
Other DBs
NCBI-GeneID:
110987536
NCBI-ProteinID:
XP_022106023
UniProt:
A0A8B7ZK72
LinkDB
All DBs
Position
Unknown
AA seq
1734 aa
AA seq
DB search
MSKDLSSAQRGSDIVRKHNVLSLALHPWTAQSPLVDGSSMPTRKPGNVKPVLPVPLKVTM
RAETLTLFVLCLVSSGDILDSILDAAWGVFRPDSHVGREVVINSWRLELGTELSALGPGS
NDDLTGRGFRRGPLFADAAELAEPLPSDTADLLQELREGGKIVGIKEVEDYAAECLVYWF
RKPTEVITPAVDYFGSRFPKAFSIMFKIRYATDKTENLLTVVDENGSIQIQVRLGPNMCE
IQLRTNTLVSYRFFSEKFGDDEWHNIGLAIGNKQKKITSYMDCNEISSFPLRRKFELKSN
GRMIIAGTILPTESPYLGRIQTMYYRGNFLSASDCTTFFQCENVIEVPPSTTVPPSTVSY
EPLWPDWLSTPATTTVAPEPPLPEPSTPEPTPPAPVTHPPQTKPPTEAPVITEPPTTRSP
PSTKPFLVPATIRTTTQTFTVGTKHPILDVGMPGLPPGFVDQLLRHDDEQTVVYLLEELA
LNMPTAYGDRGPPGAPGPEGESGPPGELGPKGAKGIKGMRIPGYPGFRGPRGPPGQPGGK
GEDGPPGPPGLDGSKGAIGPRGGQGLQGSRGRRGGRGMKGPRGDMGDPGEKGYAGFKGTS
SEPGSSGPPGQTGFMGPMGPMGEPGLRGNPGMPGIPGFPGFMGFPGEDGEAGEVGEDGDP
GPPGPLGERGEPGLLGPPGFPGVNASGIGPPGLNGSAGPPGEPGAPGLAGTPGPRGPPGE
PGPVGRNGTEGYGGLRGSPGPDGPPGDRGERGPKGIKGHQGLEGQPGEPGFEGYQGDQGE
KGREGRAGPPGSRGEVGPEGDPGLPGEAGEKGDIGADGYSGYPGLRGDRGLPGIPGILGE
EGEEGEPGQIGVPGKNGSEVKGPQGRPGPIGPTGAPGTPGYDGSPGPRGPPGLPGEPGLD
GYPGRNGTRGRRGIAGTPGYPGVAGTTGLTGSKGEPGEPGGKGPQGDPGERGPQGIKGEP
GEPGLPGNTASDGYPGDDGLIGVDGPKGIRGEPGPPGPKGPAGVAGDPGKRGLLGDRGTK
GGKGEQGKSGLRGEVGRPGRTGGRGPKGQKGDFGSSGGLGILGRSGMRGRYGTRGNYGPK
GEKGEKGEIGPDGEPGLMGERGIDGPPGLQGEQGIPGPPGPLGNKGIPGPQGLQYGGLGE
KGRKGIEGVVGVEGPQGAPGDVGPLGAKGSKGDPGIGGDIGPPGEPGPPGPVGPLGLQGR
NGSSGRDGLPGEKGPKGVEGSYGLSGSDGLVGERGIAGEKGDMGALGPPGPPGRSGYFGI
QGPKGRVGLRGRQGRRGFKGAKGLRGVLGPKGGKGKKGSRGLEGLEGYKGGLGEPGYMIN
GEDGVGGVKGPPGMKGEKGDRGPQGPPGPLGREGYSVTGASGPFGLPGERGPKGPKGERG
PPGLPAQPGEELIMGPPGPPGPRGPPGPPGKPGKIKGEKGDQGPKGEAPQGQKGQKGQKG
LPNDPPVRGPKGPKGNPTPGNPGQPGPPGSQGPPGLQGPDGYKGLQGPKGIRGPPGPPGP
PGPPAGTEPLPSPPPSVTPPTTPPVTVPDIRKKTGTEADPAVNCKDLKSDFPDYPDGQYW
LDPNEGSAGDKFQAYCDLSGGGRTCVSPVTATIEAKAWDISEARWFSTWPEGFTITYPAS
LVQFRFLHLRSKRATQEVTYTCQRGVAYYHQKGDHYDKSAQFKAYNDDIITHESPMLQVA
LDDCMVAPKKRKTTVMELSTRDVEQLPITDVNPQGYNQNKGQVFGLEIGPVCFL
NT seq
5205 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaagatttatcgtctgcccagagaggaagtgatattgtgcgtaaacataacgtg
ctttcgctcgcactgcacccttggactgcacaatcccctcttgttgacggaagctcaatg
ccgacacggaaacccggcaatgttaagccagttttacccgtaccactcaaagttacaatg
agagcagagactctgacactgtttgtgctttgtctggtgtcttctggggatattttggac
agtatactggatgctgcctggggagtttttcgtccggacagtcatgtaggccgggaggtc
gtcatcaactcgtggcgtctggagttgggcaccgagctcagtgcactcgggccagggagc
aatgacgatctgacgggtaggggcttccggcgaggcccgctgtttgcggatgccgcggaa
ttggctgaaccactaccatcagacaccgctgatctcttgcaagaattgcgcgagggaggc
aaaattgttggcatcaaggaagtggaagactatgctgcagagtgccttgtgtactggttc
cgcaaaccaacagaagttatcacaccagctgtagattactttggttcaagatttcccaaa
gcttttagcatcatgttcaaaatcagatatgccacagacaaaactgaaaaccttctcacc
gtggttgatgaaaatggcagcattcagatacaagttcggctaggtcccaacatgtgtgag
attcaactacgaacaaacacattggtgtcatacaggtttttcagtgaaaaatttggcgac
gacgaatggcacaatattggcctagccattggcaacaaacagaagaaaatcacaagctac
atggactgtaatgagatctcctcatttcctttgaggaggaagtttgagctgaaatccaat
ggcagaatgatcatcgctggcaccatcttaccaactgaatcaccttatcttggaagaata
cagaccatgtattaccggggtaattttttgtcagcatctgattgtacaacattcttccag
tgtgaaaatgtaattgaggttccaccttcaaccacagtccccccgagcacagtatcatac
gaacccctttggccagattggctgtcaacaccagcaacaactacagtggcacctgagccc
cctctccccgagccttcaacccctgaacccacacccccagctcccgtaacacacccgccc
cagacaaagcctccaacagaagcgccagtgatcacagagccgccaacaacaagaagtcca
ccatccaccaagccatttctcgtgccagccacaatacggaccacaacacagacattcaca
gttgggacaaaacatcccattcttgatgtaggcatgccaggcctccctcctggctttgtt
gaccagctgctaagacatgatgacgagcaaacagtggtctacctcctggaagaattggcc
ctaaatatgcctactgcctatggtgatcgtggtccacccggagccccaggtcctgaaggt
gagtctggaccaccaggagagcttggacctaaaggggcaaagggcatcaagggaatgagg
attccaggctatccaggtttccgtggtcccagaggtcccccaggccaacctggagggaag
ggagaggatggaccaccaggcccaccgggactggatgggtccaagggtgcgattggcccg
cgtgggggccagggacttcaaggttcaaggggtaggaggggaggacgaggcatgaaagga
ccacgtggtgacatgggtgatcctggtgaaaaaggttatgcaggatttaaaggaacttct
tcagagccaggatcctcggggccacctggacaaactggcttcatgggacccatgggacca
atgggagaaccaggactaaggggtaacccaggcatgccaggaattcctggattccccgga
ttcatgggctttcccggtgaggatggtgaggcaggggaggttggtgaagatggtgatcca
ggacccccaggacctctaggagagagaggggaaccgggattactgggaccccctggattt
cctggagtcaatgctagcgggattgggccacctggacttaatggatcagcaggaccccca
ggggagcctggagcaccaggtctagctgggacaccaggcccacgaggtccaccaggagaa
cctggcccagtgggcaggaatggcaccgaagggtatggaggattgaggggcagccctggc
ccagatggaccacctggtgacagaggggagcggggcccaaaaggaattaaaggtcatcaa
ggtctagaggggcaaccaggggagcctggatttgagggttaccaaggcgatcagggtgaa
aagggacgagaaggtagagcaggaccaccaggctccaggggcgaggtggggcccgagggt
gatcctggtttacccggtgaagctggggaaaagggggatattggggctgacggttactcc
ggctacccaggcttgcgtggggacagaggcctaccaggaatacctggaatacttggggag
gaaggggaagagggggagcctggccaaataggtgtacctggcaaaaacggttccgaagtc
aagggaccacagggtcgaccagggccaattggacccacaggggctccgggcacacctggc
tacgatggttcacctgggcccaggggtccccctggactccctggtgagcccggactggac
ggttaccccgggagaaacggaactagagggcggaggggcatagcaggtacgccgggttat
cctggtgttgctggcactactggactcacggggtcaaaaggagaaccaggggagccaggg
ggaaaaggcccacaaggagatccgggtgagagaggaccacagggcatcaaaggtgaaccg
ggggagccgggcctgccaggaaacactgcttcagatgggtatccaggggatgatggactg
atcggtgttgacggtcctaaagggatacgaggtgaaccagggcctccgggccccaaggga
ccagctggtgtcgcaggagacccaggaaaaaggggattactgggtgacaggggtacaaaa
ggaggcaagggagagcagggcaagtcaggacttcggggtgaggtcggtaggcctggaaga
actggtgggcgtggtcccaagggacagaagggagactttggcagcagtggcggattaggg
atactgggcaggagtggaatgcgggggcgatacggcacacgaggaaactacggcccaaag
ggggaaaagggcgagaagggggagattggaccggatggagagccaggcctcatgggggag
cgaggcatcgatgggccccctggcctgcagggtgagcagggcatccctggaccaccgggc
ccgctgggaaacaaagggataccaggtccccaaggcttacagtacgggggcctcggagag
aagggtaggaaaggtatagaaggtgtggtcggtgtggaagggccccagggtgcaccgggt
gatgtgggtcccctgggcgcaaagggcagcaagggtgacccgggcatcggcggggacatc
gggccaccgggtgaacccgggccaccgggaccagtcggaccattgggtttacaaggtcgt
aatggctcatcagggcgtgatggtctaccaggagaaaagggacccaaaggagtggaggga
tcatacggcttatctggctccgatggactcgtgggagagcggggcatagccggtgagaag
ggcgacatgggcgcacttggaccgccgggcccgccagggcgctcaggctactttggcatc
cagggtcccaagggaagagtgggactgcgaggtcggcaaggacgcaggggtttcaagggg
gccaaggggctcagaggcgtgctgggccccaaaggaggcaagggcaagaagggatccaga
ggcttggagggtctggagggctacaaaggcggtctgggggaaccgggctacatgatcaat
ggagaggatggcgtgggtggagtgaagggcccacctggcatgaaaggagaaaagggtgat
cgtggacctcagggaccgccaggtccgttaggcagagaaggatattctgtgacaggtgct
agcggcccatttggacttcctggtgagaggggtcccaagggcccaaagggagagagaggt
ccgcctggactaccggcccagcctggagaggagctgatcatgggaccaccgggacctcca
ggacctcgtggcccccctggaccaccgggcaagcctggaaagataaagggtgagaagggg
gatcagggtcccaaaggtgaagcaccgcaaggtcagaaaggtcaaaaaggccaaaagggc
ttgccaaatgaccctccagtgagaggccctaaaggcccaaagggcaacccaacaccaggc
aatccagggcagccaggcccaccaggatcacaggggcctcctggactacagggaccggat
ggctacaaaggtttgcagggccccaagggcatcaggggtcctcccgggcccccaggtccc
cccggtccccctgcaggcacggaacctctgcccagtcctccaccctcggtgacacctcca
acgaccccgcctgttactgtgccggacatcaggaagaagacgggcactgaagctgaccca
gctgtcaactgtaaagacttaaaatcagattttccagattatccagatgggcagtactgg
ctggatcccaatgagggttcagcaggggacaagttccaggcctactgtgacctgtcggga
ggcggcaggacttgtgtcagccctgtgactgcaacaattgaagccaaagcgtgggacatc
agcgaagcacgctggttcagcacctggcctgagggattcacgataacctacccagccagc
ctagtccaattcagatttttacatttaagaagtaaaagagccacccaagaagtaacctac
acatgtcaacgtggtgtggcttactaccaccagaagggggaccactatgacaaatctgcc
caattcaaggcatacaatgatgacataataacccacgagagtcccatgctacaagtagca
ctagatgattgtatggttgcacccaagaagagaaagaccaccgtcatggagttgtcaacc
agggatgtggagcagctccccatcactgatgtcaacccccagggctacaatcagaacaag
ggtcaggtgttcggcttggagataggtccagtgtgttttctttga
DBGET
integrated database retrieval system
