KEGG   Acanthaster planci (crown-of-thorns starfish): 110988050
Entry
110988050         CDS       T05078                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4 isoform X1
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
aplc  Acanthaster planci (crown-of-thorns starfish)
Pathway
aplc03018  RNA degradation
aplc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aplc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110988050
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110988050
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aplc03019]
    110988050
   03041 Spliceosome [BR:aplc03041]
    110988050
Messenger RNA biogenesis [BR:aplc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     110988050
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     110988050
Spliceosome [BR:aplc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    110988050
SSDB
Motif
Pfam: LSM EBNA2_Core
Other DBs
NCBI-GeneID: 110988050
NCBI-ProteinID: XP_022106960
UniProt: A0A8B7ZPY1
LinkDB
Position
Unknown
AA seq 146 aa
MLPLSLLRTAQNHPMLVELKNGETYNGHLVACDNWMNINLREVICTSRDGDRFWRMPECY
IRGSTIKYLRIPDEVIDMVKEEVVAKGRGRGGGQQRGRGRGGPGRGVQLKVGAPFSCLGS
CGCCSTESQSVLYGSTLFVYHKNLKQ
NT seq 441 nt   +upstreamnt  +downstreamnt
atgttaccactctctcttctgagaacagctcaaaaccaccctatgctggtggagttgaag
aatggagagacatacaatggacatctcgttgcatgtgataactggatgaacattaacctc
agggaagtcatctgcacatcaagggatggagacagattttggagaatgccagagtgctat
atacgagggagtaccattaagtacctgcgaatccctgatgaggtgatagacatggtcaaa
gaagaggttgttgcaaaagggcgtgggagaggtggaggtcaacagagagggcgtggacgg
ggaggaccaggaagaggagtccaactgaaggtaggtgcacctttcagctgtctgggatca
tgtgggtgctgttcaacagagagtcagtccgtcttgtatggtagtactttattcgtttac
cataagaatctcaaacaatag

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