Acanthaster planci (crown-of-thorns starfish): 110988286
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Entry
110988286 CDS
T05078
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
aplc
Acanthaster planci (crown-of-thorns starfish)
Pathway
aplc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aplc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110988286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aplc03019
]
110988286
Messenger RNA biogenesis [BR:
aplc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110988286
mRNA degradation factors
5'-3' decay
Decapping complex
110988286
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
110988286
NCBI-ProteinID:
XP_022107339
UniProt:
A0A8B7ZPJ6
LinkDB
All DBs
Position
Unknown
AA seq
928 aa
AA seq
DB search
MTEFMFGDDPEMPPLEEGPDDEYDELNDETFGGDFEGDWQDTHEKFSAGFGNTSFEDDYS
TKRPHDSGCYTGERARMHEENLEESISKLVLDDEDDEDDMYTDKSSAKKSQPITIGNGAS
MGNSNMAQLFGPSSPPALFDPQEFISPGSRKNIWGSPTTKKVTTNTEQHLKAMLNIHPPE
ELPLEDPAVIQAIASTEPAKKVLTLEELEKDLTDRAPPQRTVSPILGSPPASRMMPVGTP
PQHSLLQRTPAGVVHQHQQQLKRQQQQQQQVMQHLQSKSSGQPMTPQQQQQQLAASPAVQ
QLVQKIHQSVGGRVSPTYIRQLVLSMQAANGRASPNQIRQLIMANSAQGSASPFPRPMAA
GMTPPAKGMAPPTGGPPPTRTPMQQQPQHQQQHQQQQQQRFGSPMMQQRPMSPMMHQQRQ
GPPMMQQGRTSIMPFPPGSVIGGPHLRTPQGVRGSGPGRAMNTYLTPMHPHIPPMRPFSD
PGLRRRYPFNNQQRPFSQTPNRYGDNRHQRPHHNRYNEQRRPGPGGDASTDDYANLMTQR
EKEWVQKIQLLQLQSNNPEVDDYYYQAYMQKKQGQEEQGKEGVQAEKTKKNGKESGKITP
NTKSLETRVYQPAQYEGALGRVTSSSVNNPRQLIDFHIEAVGDEEEGTKPSAAKEQSKKR
RTLLSIERVYGILLQLDDLGKQVLTLTESDRRTLLEKRQSLLGVVYAHLKPETVLCDRPS
DDHFIQVLSVRKGRRLITRVLPLLEKKEAQYVVQALLRNMSLLLKKESQEMRKELQETQK
ASAQETLPAVFPPVWRCIQATTLPELTCMVKQLTAGASSVSPSRQYGSIISLHMQNKFGV
SVILCLLSQGERIYSSTSLVDLEEDAQNDWVDCVNQFAKDICVVADTAIPQPLVIVDNVL
PHFARFVSKQTFNALEKRLRSITTDKTS
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgacagagtttatgtttggcgacgacccggaaatgcctcccttggaggagggcccggat
gatgaatatgacgagctcaatgatgaaacatttggaggtgattttgagggagactggcag
gacacacacgagaagttcagtgcagggtttggcaacacctcatttgaggatgactacagc
acaaagagaccacacgattccggttgctacactggagagagagcccggatgcacgaggaa
aatcttgaggagagcatcagcaagctggtcctggatgacgaagacgacgaagatgacatg
tacacagacaagtcgtccgccaagaaatctcagcccatcactattggaaacggagccagc
atgggaaattccaacatggcccagttgtttggcccctcctccccgccggcactctttgac
ccccaggagtttatctcgccggggagccggaagaatatctggggctcgcctaccaccaag
aaggttaccaccaacaccgagcagcacctcaaagccatgctcaacatccatccacctgag
gaattgcccctcgaggatccagctgtcattcaggccattgcgagcacagagccggccaag
aaagtgctgaccctggaggagctggagaaagacctgacggaccgggcacccccgcagcgc
acggtctccccaatcctgggctcgccacctgccagcagaatgatgccagtgggcaccccg
ccccagcactccctcctgcagcggacaccggcaggcgtggtgcaccagcatcagcagcag
ctgaagaggcaacagcagcaacaacagcaggtgatgcaacacttgcagtccaagtcttct
ggtcagcctatgacaccacagcagcagcagcagcagttggctgcttcacctgcagtgcag
cagttggttcagaagattcatcagtctgttggaggtcgcgtatcacccacttacatcagg
cagcttgtcctcagcatgcaggcagccaatggccgggcttccccaaaccagatccgtcaa
ctcatcatggccaattcggcgcaaggcagtgcttcgccattccctaggccaatggcagct
ggcatgactccccctgctaagggtatggccccacccactggaggaccccctcccaccaga
actccaatgcagcaacaaccacaacaccaacagcagcaccagcaacagcagcagcagcgt
tttggctctcccatgatgcagcagcgaccgatgtcacccatgatgcaccagcagcgccag
ggcccgcccatgatgcaacagggccgaacttccataatgccatttccccctggcagcgtg
atcggaggaccacacctgcgcacccctcaaggcgtgcgggggtccggcccagggagggct
atgaacacctacctgacacctatgcacccacatattcctccaatgcggcccttctctgat
cctggattgagacggcggtatccattcaacaatcaacaaagaccattttctcaaacgcca
aatcgctatggagacaacagacaccagcgacctcatcataaccgttacaatgaacagcgc
cgccctggtcctggtggggatgccagcaccgatgactatgcaaacctgatgacacagcgg
gagaaagagtgggtccaaaagatccaactgcttcaactacagagcaataatcctgaggtg
gacgattactactatcaggcctacatgcagaagaagcagggccaggaggagcagggcaag
gagggagtgcaggctgagaagacaaagaagaatggcaaggaatctggcaagatcacgccc
aacaccaagtcactcgaaaccagggtctaccaaccagctcagtatgaaggtgctctcggc
cgggtcacatcatcaagtgtcaataaccccagacagttgattgacttccacatcgaagca
gttggtgacgaagaagagggcaccaaacccagcgctgcaaaagagcagagcaagaagcgc
cgcaccctcctgtccatcgagcgggtctacggcatcctgctgcagctggacgacttgggg
aaacaggtgctgacactgaccgagtcagaccgcaggacgctgctggagaagcggcagagc
ctgcttggggtggtgtatgcccacctcaagcccgaaacggtgctgtgcgatcgaccatca
gatgaccatttcatccaagtcttgtcagtgcgcaagggacgtcggcttattaccagagtc
ctacctctgctggagaagaaagaggctcagtacgtagtccaggccctcctccgaaacatg
agtctgctcttgaagaaggagtcgcaggaaatgcgcaaggaacttcaggagacacagaaa
gcgagtgcgcaggagacgttgcccgctgtcttcccgccagtgtggcgctgcatccaggcc
accaccctgcccgagctgacctgcatggtgaagcagctgacagcgggggcaagcagcgtg
tcgccgtcacggcagtacggctctatcatctcactccacatgcagaacaagtttggtgtg
tctgtgatcctgtgcctgttgagtcaaggagagaggatctacagcagcacatcacttgta
gacttggaggaagatgcccagaatgactgggtggattgtgtgaaccagtttgccaaagac
atctgtgttgttgccgacactgctatcccccaacctctagtcattgtcgacaacgttctg
ccacattttgcacggtttgtcagcaagcagacattcaatgcccttgaaaagagactcaga
tctatcacaacagacaagacatcgtaa
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