Acanthaster planci (crown-of-thorns starfish): 110988724
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Entry
110988724 CDS
T05078
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
aplc
Acanthaster planci (crown-of-thorns starfish)
Pathway
aplc03013
Nucleocytoplasmic transport
aplc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aplc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110988724
03015 mRNA surveillance pathway
110988724
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aplc03019
]
110988724
Enzymes [BR:
aplc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110988724
5.6.2.5 RNA 5'-3' helicase
110988724
Messenger RNA biogenesis [BR:
aplc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110988724
mRNA cycle factors
Common to processing body (P body) and stress granule
110988724
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
AAA_16
SLFN-g3_helicase
NPHP3_N
UvrD-helicase
Helicase_RecD
DEAD
nSTAND3
ATPase
SRP54
AAA_22
DUF269
NACHT
AAA
Motif
Other DBs
NCBI-GeneID:
110988724
NCBI-ProteinID:
XP_022108204
UniProt:
A0A8B7ZS25
LinkDB
All DBs
Position
Unknown
AA seq
1147 aa
AA seq
DB search
MSVDAYGPSSQSLTFLDTEDGELLGADTQGTDFEYNVGDFTLPSQTQTQSQASQLDVVSQ
SQSQAGLSLDTKPAQQNGFVEDGVASTVQTLKELTFEEDEEETYYTKDLPDHACRYCGIH
DPAAVVLCNTTKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHRDSPVGETALECYNCGCR
NVFLLGFIPAKVDSVVVLLCRQPCATQSNLKDMNWDPSQWQPLIQDRCFLGWLVKVPSEQ
EQLRARQISAAQINRLEELWKNNSEATLEDLEKPGADEEPASVMLRYEDAYTYQNIFGPL
VKMEADYDRRTKENQNQSNISVRWDIGLNRKTRAFFNFPKKEDLKLMQGDELRVRYLGDL
QEPWSGVGHVVKIPDNYGDEICIELKSNAKVPVNCITNFVVDFVWKSTSFDRMQSALKTL
AVDETAVSSYLYHKLLGHEVENMVIKSSLPKRFSAPNLPELNHSQVSAVRTVLTRPLSLI
QGPPGTGKTVTSASIVYHLAKQGLGQVLVCAPSNIAVDQLTEKIHKTGLKVVRLSAKSRE
AIDSPVSFLTLHKQVRNMEGSEEQTKLQALKDEIGELSSADEKRYRTLKRNSERELLQNA
DVICCTCVGAGDPRLARFRFRAVLIDESTQATEPECLIPVVLGCKQVILVGDHCQLGPVV
MCKKAANAGLSQSLFERLVVLGIRPIRLQVQYRMHPSLSAFPSNIFYEGSLQNGVSAADR
IAKAVEFPWPQPDKPMFFYATSGQEEISSSGTSFLNRTEASNVEKITTSFLRAGVKPEQI
GIITPYEGQRAFIVQYMQYSGPLNVKLYQEVEIASVDAFQGREKDYVILSCVRANDHQGI
GFLNDPRRLNVALTRCRFGVIIVGNPKVLSRHPLWNHLLTYYKEQKVLVEGPLNNLKESL
IQFSKPRKLVNTANPGGRFMTTAMFSAKEAMIPGSIYDRSGMMNGDSSRYVPGPGRIHDQ
MGYIQQGSAQFGGANLPMPVNMFMPPPPQPGAHFFNQGMRGGGPSPMGGQQVPQQRGKGA
PPYSKRRGKTPGQQQQGVHGRGPQPGVGGATQGGASQNMSQYNLSMQSQEGTMAFSQGPL
TQGMSMSQPGLSQAGFSQPGLSQPGLSQPELSQDSYLGEEFKSQMDAALSQDSTYQGDRN
YQHGFGY
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtagatgcgtacgggccgagctctcagagtttaactttcctggacacggaagac
ggcgagttattaggcgctgacacacagggcacggacttcgagtacaatgtgggggacttc
accttgccatcccaaactcagacacagagccaagcatcacagctggatgtggtctcacaa
agccagagtcaggccggcctgtctttggataccaaaccagcccagcagaatggttttgtc
gaagatggcgtagcctccaccgtgcagactctaaaggaattgacatttgaggaggacgag
gaggagacgtactacaccaaggatctccctgaccatgcctgcaggtattgtggaattcac
gacccagccgctgtggtgttgtgcaacaccaccaagaagtggttctgcaatgggcgggga
aacacctctggaagtcacattgtcaaccacctggtgcgtgccaagtgcaaggaggtgacc
ctccatcgggacagccccgtgggagagacggccctggagtgctacaactgcggctgccgc
aatgtgttcctgctgggtttcattccggccaaggtggactcggtggtcgtgctgctgtgc
cgtcagccctgcgccacccagagcaacttgaaggacatgaattgggatccgtcccagtgg
cagcccctgatccaggaccgctgcttcctaggctggttggtcaaggtgccctcggagcag
gagcagctgcgggccaggcagatctcggccgcccagatcaaccggctggaggagctgtgg
aagaacaactcagaggccacgttggaggacctggagaagcctggtgccgacgaagagccg
gcgtcagttatgctgcgttatgaggatgcctacacctatcagaacatctttggccccctg
gttaagatggaggccgattatgaccgtcggaccaaggagaatcagaaccagagcaacatc
tctgtgcgttgggatatcggactgaatcgcaagacaagggcattcttcaattttcccaag
aaagaagatctgaagctgatgcagggagatgagctgagggtacgttaccttggcgacttg
caagaaccttggtcaggagttggacatgtagtcaagataccggacaattatggagacgag
atctgcatcgagttgaagagtaatgccaaggtcccagtcaactgcatcaccaactttgtg
gttgactttgtctggaaatccacgtcttttgacaggatgcagagtgccctgaagaccctc
gccgtggacgagacagccgtgtccagctacctctaccacaagctgttgggccacgaggtg
gagaacatggtcatcaagagcagcctgcccaagcgcttctcggcacccaacctgcctgag
ctgaaccactcgcaggtgtcggccgtccgcacggtgctgacccgccctctcagcctcatc
cagggcccacctggtactggaaagacagtgacttcagcaagcatcgtgtaccatcttgca
aagcaagggctgggacaagtcttggtgtgtgcccccagcaacatcgccgtagaccagctg
acggagaagattcacaagacggggctgaaggtggtcaggcttagtgccaagagccgagag
gccatcgattcccctgtctcattcctcaccctccacaaacaggtgcgcaacatggaagga
agtgaggagcagacaaaactgcaggccctgaaggatgagattggagagttgtccagtgcc
gacgagaaacgctaccgcacactcaagaggaactctgagagggaattgttacagaacgct
gacgtgatttgctgcacgtgcgtcggtgcaggtgatccgcgcctagctcgcttccgtttc
agggcagtgctgattgacgagagcactcaggccaccgaaccagagtgtctcatacctgtt
gtcctcggatgcaaacaggtgatccttgtcggtgaccattgccagctgggtcctgtggtc
atgtgcaagaaggcagccaatgccggcctgtcgcagtcgctgtttgagcggctggtggtt
ctgggcatccgaccaatcaggctgcaggtccaataccgcatgcacccatccctgagcgca
ttcccgtcaaatatcttctatgaaggatcgcttcagaacggagtgtcagcagcggaccgt
atcgccaaggctgttgagtttccctggccccaacctgataagcccatgttcttctatgct
acctctgggcaagaggaaatatcgagctcaggaacctcctttctcaacaggacggaggcg
tccaacgtggagaagatcaccacctccttcctccgtgccggcgtcaaacccgagcagatc
ggcatcatcaccccgtatgagggccagcgggccttcattgtccagtacatgcagtacagt
ggcccgctcaatgtcaagctttaccaggaggtggagatcgccagcgtggacgccttccaa
gggcgagagaaggactacgtcatcctgtcctgcgtccgggccaatgaccaccaaggcatt
gggttcctgaatgatccacgccgtctgaatgtggctctgacccgttgcaggttcggtgta
atcatcgtgggcaatcccaaggtcctatcccgtcaccctctgtggaaccacctcctgacc
tactacaaggagcagaaggtgctggtggaggggccactgaacaacctcaaggagagcctg
atccaattcagcaagcccaggaagctggtcaacactgccaacccgggcggtcgcttcatg
acaacggccatgttcagtgccaaggaggccatgataccaggcagcatatacgaccgatca
gggatgatgaacggggattccagtcgctacgtccctggaccgggtcgcatccacgaccag
atgggttacatccagcagggctccgcccagtttgggggagccaaccttcccatgccggtc
aacatgttcatgcccccacccccacagcctggcgctcacttcttcaaccaggggatgagg
ggtggcggcccatctcccatggggggccagcaggtgccccagcagaggggcaaaggggca
ccaccctactccaagaggagggggaagacgccgggccagcagcaacaaggggtgcatggg
aggggtccccagccaggagtgggtggagccactcagggtggggccagtcagaatatgtcg
cagtacaacctgtctatgcagagccaggaaggcaccatggcgttttcccagggaccactc
acccagggtatgtccatgagtcagccgggcctgtctcaagctggcttctctcagcccggc
ctgtctcagccgggcctgtcccagcccgagctctcgcaggacagctacttgggggaggag
ttcaaatcccagatggacgcagccctctcccaagactccacctatcagggggatcgcaac
taccagcacggctttggctactag
DBGET
integrated database retrieval system
